Genomic Location: chr7:8129651...8130650
NR annotation: XP_020898348.1, protein IMPACT [Exaiptasia diaphana]
Species Metridium senile · all data for this species · gene families
| CDS |
| ENSDTNT00000035195 |
| Transcript |
| ENSDTNT00000035195 |
| Protein |
| ENSDTNP00000033697.1 |
| UniProt accession | Description |
|---|---|
| Q5M8G6 | Protein IMPACT-A OS=Xenopus tropicalis OX=8364 GN=impact-A PE=2 SV=1 |
| Q9W625 | Protein IMPACT OS=Xenopus laevis OX=8355 GN=impact PE=2 SV=1 |
| Q5GFD8 | Protein IMPACT OS=Oryctolagus cuniculus OX=9986 GN=IMPACT PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004874 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01205 all species → | UPF0029 | Uncharacterized protein family UPF0029 | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR023582 all species → | Family | Impact family | Interproscan |
| IPR020569 all species → | Conserved_site | Uncharacterised protein family UPF0029, Impact, conserved site | Interproscan |
| IPR036956 all species → | Homologous_superfamily | Impact, N-terminal domain superfamily | Interproscan |
| IPR001498 all species → | Domain | Impact, N-terminal | Interproscan |
| IPR020568 all species → | Homologous_superfamily | Ribosomal protein uS5 domain 2-type superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR16301 all species → | IMPACT-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0006446 all species → | Biological Process | regulation of translational initiation | Interproscan |
| GO:0060733 all species → | Biological Process | GCN2-mediated signaling | Interproscan |
ENSDTNP00000033697.1.Genes whose expression across the transcriptome samples of Metridium senile tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Metridium senile, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
