Gene detail

Detailed information of ENSDTNP00000036652.1 in Metridium senile

Genomic Location: :...
NR annotation: XP_031560442.1, nuclear localization sequence-binding protein-like [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSDTNT00000038457

GATCCTTTCCACGCAGAACGTCGTACAGTGAGTTCCACGTGTTTTCGAGTCACACAGAAAAACCTCAAAAACTCGCCTAAAGACGTTCTAACATGGCCAAAACAAAGTCCGCCAAGAAGGCCCAACCGGATGAGACAACTAAAGTTAAAAAAGTGAAGGAACCCGTTGACGAGAACAAAAATGTAACAAACGGagaaaagaaaagtaaaaagaAGACGAAAAATGGAACAGCCAAAGCTCCCCCACCTCCCGTCAAGAAACCAGTTGAGTCTGACTCAGATTCCTCAGAATCCGAAGATGAAGCCCCACCTAAGACCACTCTCAAAACAGACATATTAAAATTGAAAGGGGTCAAGAAAGACTCTGATTCAGACTCCTCAGACAGTGACAGTGAGGACGAAAAACCAGCACCAAAGAAAAATGGTGATGCCAAGAAAGCAGCACCCAAAAAAGCAGAGGCAAAGAAGCCAGTGAAAAAAGACGAATCAAGTGACTCTGATGATAGTTCAGAGGATGAAAAGCCTGCCAAGAAAGCAGCACCCAAAAAAGCAGAGGCCAAGAAGCCAGCGAAAAAAGATGAATCAAGTGACTCTGATGATAGTTCAGAGGATGAAAAGCCTGCCAAGAAAGCAGCACCCAAAAAAGCAGAGGCCAAGAAGCCAGCGAAAAAAGACGAATCAAGTGACTCTGATGATAGTTCAGAAGACGAAAAGCCTGCACCCAAAAAAGTAGAAGCAAAAAAGCCAGCCAAAAAAGAGGAGTCAAGTGACTCTGACGATAGTTCTGAAGACGAGAAACCCGCTGCAGCAAAGAAGAAAGCAGAAACTCCAAAAGCAAAGAAAGAAGAATCAAGTTCAGAGGAAGAGTCGTctgatgaagaagaaaaaaagaaagcacCTGTCAAGCCGGTTAAGGAagtgaaaaaaagaaagaagagtgattcatcagatGAGGATTCAGATTCCGACtctgaagaagaagaagcaccCAAGCCAAAGAAAAGCAAGAAAGAGGAATCAAGTGATGAGGATTccgatgatgaagaagaagaagagaagccAAAGACACAGAAAAGAAAGCAAGAAGAACCAATGGAAACAGTCACTCCAAAGAAGCCCAAAGAAGAACAGAATTTGAGCATATTCATTGGTAACCTCCCATTCAGTGCAGACAACGAGTCACTACAAGCATATTTTGAAGAGAATGGCATAAGTGCGAGTGTACGCATCATTATGAGAGATGGCCAACCCAGAGGGTTTGGTTACGCCGACTTTGAATCTGAAGAGGACTATAACAAAGGGCTGGAAATGAACGGAATGGAGTTCATGGGTCGTGAAATGAGAATCAACGCAGCTGATAGCAAGCCCAATACCCCCAGAAGTGGAGGATTTGATGGCGGACGCGGTCGAGGAGGACGAGGTGGTGGTCGCGGCAGAGGAGGCGGTAGAGGTGGTTTCAACTCTCCACAAAACCCCCCAAACAGTTCGCTGATAGTGAGGAATTTATCATATGATACAACAACAGAATCGCTAGGTGCTGCGTTTGATGGATGTGCCAATGCTAGAGTTATCATGGACAGAGACAGTGGAGAATCCAAAGGATTCGGATTTGTAGATTTTGATGATGTATCCACGGCAACATCAGTGCTCACTTCAATGAGTGGGGCCTCAATCGACGGCCGTGCAGTCAGACTAGACTATTCCTCACCCAGACCTGAAGGAGGTGGacgaggaggaggaagaggtggtggtggtggattcCGTGGTGGTGGAGGAAGAGGGGGTGGACGTGGAAGAGGTGgcggaagaggaggaggagGAAACTTTGGACCATCAAAGAAAGGCTCAATCCAAGAATACAAGGGATCGAAAATCACATTTGACTAGTTGATATTATTGGATGTACATCATagtgtattttattattttagccCACTGTTATAATCATTTCAAACTATGAACCAGCCTGCATAATTTATAGTCAAAGGCTGAAAGGATTATAAGAGATACTACTTAAAGATGAACGCCCTTTGTGGGTTCAAAtaattttgttaacattaagaTCAACATTTACATCATTCAACTTTAGAGAGATAATAATCTTACAGCTTTTAAAGGGAATTTGTATGTTTCCAAGCTAACGCCCATGTAGTGCTCAAGTTGCTTACTTGAAGGTATGATTCTTTTCCAGTCATTGTGAATATATGCCACATCTTTCACTACGtaaaaaataccaaaatatttatcattatgccaaggttttttatatataatattatacacAAACATCACAtgaatgataaaaatatcatgGTATTTTAAGTTTTATTGAAATAACCTGACCAAAAATAAGACATTATTGTACCATGTTGAGTGATTGTTCATTTTGAAGAATGTATTGTAGTATTATCTACAGTTAATAAACCAGGGGCCAGCTGTTCAAAGCTTGACTAAAACTAACTAGGGTTTTGTTGGGCTAACAGGGCCAAAGATCAAATCAAATCATATCTTACGATGTAATAAGTTCAGGATTTTGTTCAGTATGTATGTTTGTGTACATCGTCTATTGCCATGTTGTCGAGCTCCCCATTGTTTTGGGTTTGTACTAGTACATTGTATTTTGAGGTCGTTTTGTGATGGGGTTTTATGATATggatatattgtatatacatgcatcaacattattttgtaataatattaattatcacTTCAAATGGTTATCAATTACATTCCTTTGTATTCTACATTTCTTCCATTTGTAATGAGAGCATTTACTGTTACATTAAAGCTTTTCCTTCACTTGTCA

Protein

Uniprot

Uniprot term	Description
P20397	Nucleolin OS=Xenopus laevis OX=8355 GN=ncl PE=2 SV=3
Q9ZUU4	RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29B PE=1 SV=1
P49314	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR050374	Family	RRT5/SRSF/Splicing Factor SR	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23003	RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11294	NCL, NSR1; nucleolin	-	Chromosome and associated proteins	ko03036	deepkoala