Gene detail

Detailed information of ENSEWQP00005000222.1 in Acropora spathulata

Genomic Location: :...
NR annotation: XP_015752092.1, PREDICTED: U6 snRNA-associated Sm-like protein LSm1 isoform X2 [Acropora digitifera]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q8VC85	U6 snRNA-associated Sm-like protein LSm1 OS=Mus musculus OX=10090 GN=Lsm1 PE=1 SV=1
Q5E9Z8	U6 snRNA-associated Sm-like protein LSm1 OS=Bos taurus OX=9913 GN=LSM1 PE=2 SV=1
O15116	U6 snRNA-associated Sm-like protein LSm1 OS=Homo sapiens OX=9606 GN=LSM1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01423	LSM	LSM domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR047575	Domain	Sm domain	Interproscan
IPR001163	Domain	Sm domain, eukaryotic/archaea-type	Interproscan
IPR034104	Domain	Sm-like protein Lsm1	Interproscan
IPR044642	Family	U6 snRNA-associated Sm-like protein Lsm1/8	Interproscan
IPR010920	Homologous_superfamily	LSM domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15588	LSM1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0000956	Biological Process	nuclear-transcribed mRNA catabolic process	Interproscan
GO:0000290	Biological Process	deadenylation-dependent decapping of nuclear-transcribed mRNA	Interproscan
GO:0000339	Molecular Function	RNA cap binding	Interproscan
GO:0000932	Cellular Component	P-body	Interproscan
GO:0016070	Biological Process	RNA metabolic process	Interproscan
GO:1990726	Cellular Component	Lsm1-7-Pat1 complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12620	LSM1; U6 snRNA-associated Sm-like protein LSm1	-	Messenger RNA biogenesis	ko03019	deepkoala