Gene detail

Detailed information of ENSEWQP00005009567.1 in Acropora spathulata

Genomic Location: :...
NR annotation: XP_029204821.2, RNA-splicing ligase RtcB homolog [Acropora millepora]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
A7RKF6	RNA-splicing ligase RtcB homolog OS=Nematostella vectensis OX=45351 GN=v1g198406 PE=3 SV=1
Q99LF4	RNA-splicing ligase RtcB homolog OS=Mus musculus OX=10090 GN=Rtcb PE=1 SV=1
Q6AYT3	RNA-splicing ligase RtcB homolog OS=Rattus norvegicus OX=10116 GN=Rtcb PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01139	RtcB	tRNA-splicing ligase RtcB	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036025	Homologous_superfamily	tRNA-splicing ligase RtcB-like superfamily	Interproscan
IPR001233	Family	RNA-splicing ligase, RtcB	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11118	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006396	Biological Process	RNA processing	Interproscan
GO:0008452	Molecular Function	RNA ligase activity	Interproscan
GO:0000971	Biological Process	obsolete tRNA exon ligation utilizing 2',3' cyclic phosphate of 5'-exon as source of linkage phosphate	Interproscan
GO:0003972	Molecular Function	RNA ligase (ATP) activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0072669	Cellular Component	tRNA-splicing ligase complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14415	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase)	EC:6.5.1.8	Transfer RNA biogenesis	ko03016	deepkoala