Gene detail

Detailed information of ENSEWQP00005013810.1 in Acropora spathulata

Genomic Location: :...
NR annotation: XP_029208855.2, poly(U)-binding-splicing factor PUF60-like isoform X1 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSEWQT00005020141

GagcaaaggtttttttttaatgatcaGATAATGAGATGGAAACCAGGGGGGGCAAAATGCATCAAGGATGTGGCGATGGTTCCTCTTGACTTAAAGGTTGATAAATTATCTGAAGACAAAACAAACAGTGAAATTGATGGTAATCAGAGAAGGCGGCGGAAGAGAGGTTTTGATGTTGGGCCAGGTGAAGATTCCTCTGCATCAAATGCTATGAATGGTGACGTGGAAGACCAACCCATTGATGATGGATCAAAAGGAGAACTTGTCATTGGACCAGGGGCAGGTGGCATGCAGCCACGCCCTTCAGAAGTCAAAAGAGCATTGCCCCCTCTTACTTATCAACAAGAGGAAATGCTAAAGAAAGCAAAACGATATGCAATGGAACAGTCTGTTCAGCAGGTTTTGGCCAAACAGCAAGCCCTTCAGCAGCAACAGATGTCTGCATTACAGTCAGCTGCTCAGAGACAGAGAGCGTTAGCTCTCATGTGCAGGGTCTATGTTGGAAGCATCAACTTTGAGCTCCGTGAAGAGCATGTTCGACAAGCATTCCTTCCTTTTGGTCCTATAAAGAAAATTGACTTGTCATGGGACCCACTCACCATGAAACACAAGGGATTTGCCTTTGTAGAGTATGATCTACCAGAAGCAGCTCAACTTGCCTTGGAGCAAATGAATGGTGTACTCCTTGGTGGAAGAAATATCAAAGTTGGTCGTCCAAGTAATGTCCCACAGGCAGCGCCATTAATTGAGCAATTTGAACAAGAAGCCAAAAAATATGCAAGAATTTATGTGGCTTCAGTGCACCCTGATTTGGCTGAAGATGATATCAAGAGTGTATTTGAGGCCTTTGGCAGAGTGAAAAGCTGTACTCTAGCCCCCGACACCATGCCAGGAAAGCACAAGGGCTATGGTTTCCTAGAATATGAAAACCAGCAGTCAGCTACAGATGCCATCGCCTCAATGAATTTGTTTGATCTCGGGGGACAGTATTTGAGAGTTGGGCGAGCCATTACACCACCAGCTTCAGCACAAAGTAGCAATGGCACTCTGCCACCTGCCGCGGCTATGGCTGCTGCCGCAGTGTCAGCAAAGATCCAAGCTCAAGAACAGGGACTGACAAGTACATttCCTGCTATCACCATTGCTGGTAGTACTGTGATAACATCTCTTGTTGGTACAGCTGGTCTGGTTGCTTTACCAACTATGGCCGCAGGAACTCTGGCACCTGGTGTGATGTCAACTAGTATTGCTGCACAGCCTATTATGACATCCACAGCATTGTTGGCAGGAACTCCAACGGCAGTGGTTGCACCTATCTCTGCCACACCTGTGGTGACAACCACAGGGGTCCCAGTTCAACCTGCTGCTGTTCAGCAGTTGCaacttcaacaacaacaactccaGCAACAGCAGTTACAGCAACAACAGTTGCAACAGCAGCAGCTGCAGCAGCAATCAGTACAAGTCATTGCTGCTCAGCAGGCTGAGGTGCGCGCAAAGATAGAGGAAGAGACGCAGAAAAAGATTGCAGAGAGCAGCATTAGTCATGAGGAGAACATGTCAATATCTGGTAGCAATGCAAGATACATGGTCATGCAGAAACTCTCTCGCAAAAGTGAGTCTAAGGTACTTGTACTTCGTAACATGGTTGGAGTAGAGGATTTAGATGAAGACCTTGAACATGAAGTTACAGATGAATGCAGCAAATTTGGGGCAGTGAGCAGAGTTGTTATCTACAATGAAAAGCAAGGCGAAGAAGAGGATGCTGAAGTTATTGTTAAAATATTTGTGGAATTTTCTCAACCTGCAGAAGCTGAAAAGGCAGCCAATGCACTCAGTGGCCGCTGGTTTGGAGGCCGTGTGATCAAAGCAGAGCCTTATGATGAACTCAAATTTGGTGGAGGCGATTTATCAGGATAATGCTAGAGGTTGTGGAAACAAGATTGCTGACATGATGAAGCTTTGATCTTTGAAAAACTCATTGATTGCTGGTAGTATATGCTAGTATTTGGTTTGTGAGATAGTTTGAGAGGATTCATTTCTTGATTTAAGTGAAAGAAAAAGACCTTGTTGATCCTTATATTAGAGTTAATACAGtatttcaaattcaaagttgatATCCTAGTCGATAGGAGGGTGTACtctttttcaataatttctaTTACTAGTGGTCCTACAGTGTTCTTTTTGTTAGGTTTACCACACTATTGTAGAAGATTTAGAGTTCTTTTCCCTGGTACTCATTAGGGAGCATAGACAATAACAACTGCAATGAGGAAAAATGCTAATTATTGTGCTGCATACTTCTTTACTTTGacattctgtgaaaaaaacaacCTGTAGAGGATGTCAAAAGGTTACCTTTTTCTGTAATTTCTAATCTAGTCAGTTCTCATTTTGTATTTTGAATGATATGAAACTTATGTTTTGGAGTGTGTAAGGTCCctattttcaataattgaaTTTTTCTTGTAACAAAGTGGCTTTCTTTCTGCTTTTTTTCCCTAATAGTGCAACCAGAGAGGCCCATAGTAGTATCCATAAACACAATAAATACATTGTACATATCTATCATAAAATGTTTATTTATTCGGCAATAAAagaacacaataattattattctagaATGTATGGGAATCATCATTATCCCAAAACCCTAAGCCATGCTTTCAATCTCGGTTGGATTTGTGATCTAATGTAAGTGTTTCCAAATTCTAACTAGCAATCAATGTCAGATGCTACATTGTCATGGAGCTTTCCAGTTCTCCTTCATTGTCAAGTTCCTGCCAACAACAACAAAGTATTATCGT

Protein

Uniprot

Uniprot term	Description
Q3UEB3	Poly(U)-binding-splicing factor PUF60 OS=Mus musculus OX=10090 GN=Puf60 PE=1 SV=2
Q9WV25	Poly(U)-binding-splicing factor PUF60 OS=Rattus norvegicus OX=10116 GN=Puf60 PE=2 SV=2
Q9UHX1	Poly(U)-binding-splicing factor PUF60 OS=Homo sapiens OX=9606 GN=PUF60 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR003954	Domain	RNA recognition motif domain, eukaryote	Interproscan
IPR034209	Domain	PUF60, RNA recognition motif 1	Interproscan
IPR034211	Domain	PUF60, RNA recognition motif 2	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR034212	Domain	PUF60, RNA recognition motif 3	Interproscan
IPR051974	Family	Poly(U)-binding-splicing regulator	Interproscan
IPR006532	Family	Poly-U binding splicing factor, PUF60-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47330	POLY(U)-BINDING-SPLICING FACTOR PUF60-B-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0000380	Biological Process	alternative mRNA splicing, via spliceosome	Interproscan
GO:0000381	Biological Process	regulation of alternative mRNA splicing, via spliceosome	Interproscan
GO:0006376	Biological Process	mRNA splice site recognition	Interproscan
GO:0071011	Cellular Component	precatalytic spliceosome	Interproscan
GO:0071013	Cellular Component	catalytic step 2 spliceosome	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12838	PUF60; poly(U)-binding-splicing factor PUF60	-	Spliceosome	ko03041	deepkoala