Gene detail

Detailed information of ENSEWQP00005032075.1 in Acropora spathulata

Genomic Location: :...
NR annotation: XP_029197444.1, protein Smaug homolog 2-like isoform X1 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSEWQT00005046153

ATGACTTCTGCTTATTTCAATCGTCCGGATATTCCTTTGACTAATCACAGAACCCATAAAAATGGTTCGAATGTTCGCCTGGGACCAAGAAGACCATGGACAAGGGATTTGTCTTCATCGAGCGATATGAGGCCTGCCCATCACACGCTCTTTCGGGACCAAGTTAGCACCTTGGTGGAGTGGTTTTCCCACTGGAATGATTGTGAACGAACCATCGCGCTGTACACACTCCTAATGAGAATTTCCACAATACAGGCAAAATTTTTGTCGTTAATCCTGGAGCACACCTATCGCGAGGATTCTTACGAAGTTCAGGTGATGCAAAAGCGTGCTAACGACAAAGATTTTGTGAGGAATTTAATGTATGAAACTAAAGAAGCAGCTGTCAAAAAGCTCCTAACACATTTGCCACTCCTGAATCCAAGAAATGATGAGGCGAGATACGAGTACCTTCATCTACTTCCAAAAATTCTGCATCACTCTGTGGAGCACTCTGTTCATCAAGAAGAATGTCGACAGCTTTTGTCACTTGCTGTAGTTCATCCTGCATTCCCCCCTGAAGAGAGAAATACACTGCACCACTGGCTGAGTCAACTTGATAGGAGTCTTGGTTTCCAAGAAAGGCAACAAGCTACAAATTTTATGACGGAGAATCCAGATGTACGGCCAAACACAGGGTGTGAAAACCTTGTTCGACAAAACTACAGACGAAGGATGAATGGATGGCGCAATCAACAGCCACTTGTTCATGGCGACTCTGGATTTGGTGGTTCGTTTGAAGCTCCACCAACCCATCTGTCAGTTTCACCGTCTCCAAGGAAAGCCAGGTCAAATTCGCTCACCCCTCCCCCACCGGGGAAAGGTCGTGAATCTAGTTTGGATGATCATGTAGGGaagaaagaaattgagaatCGTCCGGGCAGGTCCCAGTCGTTTCCAGTCGATCCTCAAACAGTAGCAAGTCACTCAATGTCACCTCAGTCGTCTGTGGAAAGTGAAGTGGATGAAAATGTGCCAGTACAGAGAGGCAGTAGTTTCTCTGAAAATACAAATCCAGGAATGAaagGTATAGGACTCTGGTTAAAGCATCACAGATTGCACAAGTATACAAGCCTATTTTCAAACCTTACTTATGAAGATATGTTAAATCTCACATCAGAGATTTTGGAAACTAAGGATATCACCACAGGGGATGTGCTTGTGCCTGGTAAACTAGAGGAAGTCTTGAGTGCATTGAAAGAACTAATTGTTATGCCTTTGAAACCATTTGACCCACCCCTCCCTGAAGCTTCTGCTCAAGCTTCCCATCACTCTAAAGGTCAGATTTCACAAAGGCTGCCTCCACTTCACCCAGATGATATGCCATCACGCATTGCAAGAGTCCTTGGTAGAGCTTGCACCCAAATTCTAGTGACAAGAGTTAATGAACTGGAATGCTGTAACTTTTACATTCAACTTTTGGATTCAGCTCTAAACCTTGAGGCATATACCCCAGCTCACAAGGCGAGATTTCAGTCATGGAGAAAGGAATGTCTGAAACTCGTAAAACAACTACGCTGGCACTCGCATGATAATCATCCAAGAGGGTACAAATCACTGTGGTACCATCATTCTGGAGACTCCAGTGGGCTTCCTGCAGGTTCAGGGGGACATAATTCTGGTGACTCTTCAGGTGGTGCTGCTGGTCCATCTGCAGGCTCAGGTGGACCAGGCTCGCATTACCGAGGCTCATCTCGTTATTCTGCTAACAATCACTCCGGCCAGCTTCGAACTAGTAACAGTGCTGAATCACAGATGCAGCATAAACCAAGACTGGTAAGAGCGCATGCTGTCGTGGGCAGGACAAAGTCTCTTCCAATTGAACCAACACAACCACCAAGAGTTGCATTACCATCACAACTTTCAGCTGATCGTGAAAATATTGATGCTGGTCTGGAATCTCTTTGTATCAGTGTAACAGAACATGCTTTGTCAGGTCAGTACCTTCTGCGGTTCAAAAATTCTGGTCATGTGATAACATTTTTGTGA

Transcript

ENSEWQT00005046153

Protein

Uniprot

Uniprot term	Description
Q8CBY1	Protein Smaug homolog 1 OS=Mus musculus OX=10090 GN=Samd4a PE=1 SV=2
Q5PRF9	Protein Smaug homolog 2 OS=Homo sapiens OX=9606 GN=SAMD4B PE=1 SV=1
Q80XS6	Protein Smaug homolog 2 OS=Mus musculus OX=10090 GN=Samd4b PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR037093	Homologous_superfamily	Smaug, PHAT domain superfamily	Interproscan
IPR050897	Family	SMAUG/VTS1 RNA-binding	Interproscan
IPR013761	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12515	STERILE ALPHA MOTIF DOMAIN CONTAINING PROTEIN 4-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0017148	Biological Process	negative regulation of translation	Interproscan
GO:0030371	Molecular Function	translation repressor activity	Interproscan
GO:0000289	Biological Process	nuclear-transcribed mRNA poly(A) tail shortening	Interproscan
GO:0000932	Cellular Component	P-body	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan