Gene detail

Detailed information of ENSEWQP00005035807.1 in Acropora spathulata

Genomic Location: :...
NR annotation: XP_029211354.2, lupus La protein-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSEWQT00005051205

TCTTTGTCATCAGATACTGATGTCATAGCCATGGCTCTTAGAAAATCTCTTACTGGACTGGTTGAGGTATCTTGATTTGAGTGTCCTTAAATTTGGATATTTtgttaattgaaaaaaaattcctttttaATGGTGTCTTGGTCAATGTggctttttactttttaggtcAGTGAGGATGATAAGAAAGTAAGGAGAGTGAAATCTAAACCACTTCCAGAAGACTCAGTTGAAGCCAGACAAGAGGCAAAAGCTAGAACAGTTTACTGTGTTGTTTGGATTGCCATGCAGAGGTATAAGAAGGAAGGCGAAGAGGAGCGGCTATTCAAAGGTTCTGCTTTTGTGGAGTTTGCATCAGTTGACGATGCAAAGGCGTTTGTCGCAATGGAGTCAGTAAAGTACAACGAACAGGAGCTGATTAAGATGACAAAGGACGATTATTTTAAAAGTAAAACAGAGAGAATAAAAGCAAAAAGACAAGAGCAAAAACAAGAGGAAAAGAAGAGTGGAGAAGAAAGCAAAGagggagaagaagaagaaacggAAGAGAGCACCACAGAGGAAGAAGTGAAAAAGGAACCGAAAGAGGATGAGAATgagaaaaaagaagaaggaaatGAGGAGAAACCTCTGACTTACGTGAAAGGGTGTGTTCTGCACTTCAAGAATGTAGGCGAACAAACTTCACGGGAAGACCTGAAGGCCCTGTTTGGAGAACAAGAAGATATTGCCTGGGTGGATTTCGCTAGAGGAGCAGAAGAGGGCTTTATCCGCTTTTCCAAGGAAGGCGCTGCTCAAAGAGTCTTTGAAAGTCTGAAGGCTAAAAATGATGGCAAAGTGGTCATCAGAGATGTGGAGACAACTCTCCGTGTTATTGAAGGTGAAGAGGAAAAACAGTTTTGGATAAAAACTCaccaagaaattgaaaaagctAGGGAAAAGCAGAAAAGCAGAGGCCCAAAACAAAGAGGCGGGCAAGGCGGCCGCGGTTTTGGAGGTGGACGCGGTCGAGGTCGTGGTCGGGGTGGAAAACGAAGCTTCGAGAGACGTCCGAAGAAAGAAGGAAACGAGGAAGTAACATCGAAGAATGCACACACTCAGTTAGATGAAGGGGAACCGAGTGAAAAGAAGATTAAAATTGAGGCAGCTGATGACTGAGGCGAAGAACCAAGACTGTCAGAATAACAGCGGATTTcagtgtattaattttttttcttttttgcgacATCGCTAACACTTTTTTCTCACGTTCTATGGTAAGACTTGGAGGGCTTACCTTATTTCAGAGTAACTAAGCAAGTTTAGTTGGAGCAAACCCTTGGCAATGTTTGTCGCCTTTTCACAGCGAGGGTCGAACGTCTTGGACGAGGTCCTGTAGAATAGTTTAAAACTTACACTACCCCTTTCCTTCTCCAAAGACTAAAATTGTAAAAGCGATGCTTTGTGAGTTGACTTGCCTTCACAGTTGGAGCGGGGCGAGCGTGAGATTGAGGCTCACGTACTCTAGGCTCCCTTCATTGCTCGTCCCAGTGCCTGTGCGAGGATACGGATTGGATGAGACAGCGAGGTATCAAGTCTCAAATCTTCCACAAGCTGGCTCAATATGGTGGTTGCACATGCGCGAATGTATAAGCTGTTGAGAACCCTGTAATAAGCCAAGGAGTGCAGACTCAACTATGGCTAATTCTATGAATCCATTTCGTGGTAGTTAAAGCGTTGCAGTGTTCATCAACTCCCATGGCTGCTAAGGAAAAGAAGCGAAATAGTTGGGATTACATTATTTGTGACAGCTAACTTTGCAGGCAAGATAATAGCGTCGGCTTTGATTCATTAAATATTACCCCCTCCGTTTCAGTTTAGTGCCATTGTAAATCGTGTTTCACTGCGATTGGATTTGATGGCATGGCATCATAGAGATATCGGTTCAGTATTTTAAACATTATGTTTTGCCCCCTTTGTATCAATGTGTCAGTTTTTGTAAGTCGTTCCTTTCACGATTTTGGACTATGTGTTATATCCTTATAATTCCTTTGGATGTGATTAGTGCGTGCGTGCCCCATacagttttccttttcaatgtAAATAAATGAATTTGAACAATCTTAATATATTCTCGTCGCTGTGTCAGCGAAATATACTCGAAGAAGTTATGTATCA

Protein

Uniprot

Uniprot term	Description
P28049	Lupus La protein homolog B OS=Xenopus laevis OX=8355 GN=ssb-b PE=2 SV=1
P28048	Lupus La protein homolog A OS=Xenopus laevis OX=8355 GN=ssb-a PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08777	RRM_3	RNA binding motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014886	Domain	La protein, xRRM domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
-	-	-

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11090	LA, SSB; lupus La protein	-	Systemic lupus erythematosus	ko05322	deepkoala