Gene detail

Detailed information of ENSEWQP00005050771.1 in Acropora spathulata

Genomic Location: not available for this species
NR annotation: XP_029213928.2, glypican-4-like isoform X2 [Acropora millepora]
Species abbreviation ASPAT · all data for this species · gene families

Sequence

CDS

Transcript

ENSEWQT00005072992

CTTCTTTTCATTGGTAATTTATCCCGATTGACAGTGTCTACTGCAGTAGTCAATGACATTCTGTAATTCTTGCGCTTTTAAGTAAACATGTTTCCAAGTGcccttcaatttttaaaaagacGCCGGTTTCCCAAAAAGCAAGCCGGATGCAGCGGTGGAATGCAAAAAAGTGAAATTCAGGCGGGTGTAAAGCTGTTTTGAAGGTTGGAGCGGTTTTAGTCATTGATCTGTGGTGATCGAGAAATCATTTGCAGGTTGAAAGCCCAACTGATCGCCTTTCGAAGAGGTTTAGCTCAACAATGGCTTCTTTCTCCGCGCTTCTCGTGTTGCTTGCTTTTGCTTCTCCTTCTCTCGGTCAAGACCCTTCTTGTTCTACGGTAAAGATTGCTTACAGATCGAAAAGGTTAACAGAAGAAGATGTTCCTTCATTAGCGGTTAATGGAAGTGACCTTCGTGTTTGTCCTAAGAATAGCGGCAAGCAGTGTTGCTCTCAACGAATGGAAGACCGCTTCACAGTTTGGTCAAAGAGTGATTTTGGCGAAGCAGTGCCTTCAAAAATTGAGAAGTTAAAAGATGTCTTTGACGAGCAGGCAAAGATATTTGACGAATACTTTGAAGGACTGATCAAGAAGTCACAACAAAACCTGGACACGATGTTCAAAAAAATTTACGTCAATTATTATCTGGAAAATAGCAAGTTGTTCATGGACTTTTTTGATGATCTGAGAGATTACTACGCTGGAAAAACCAGTGATGATGTCAACAGCATTGTGGACAACTTCTTTTCCAATCTCATGATCCGCATGTATAAGATCATGAATAGGGACAGTCCGTTGAGCGACTCGTACCTGACTTGTGTCTCCAAGCAGATGGACAATTTAAAGCCCTTCGGTGATATCCCAGCAAAGCTAAAGCCACAAGTGCGCAAAGTGTTGATCTATGCCAAGTCCTTTTCTCAAGCTCTCTTTGCAGGCAGGGATGTGGTGCATTCACTTCGAATTGCAGCTGTGTCGTCCAAAGAATGCGAGTATAATCTTGTCAAGCTGAAATATTGTTCTTGGTGTAAGGCAATGACCACCATCAAACCATGTCACAAGTTTTGCACTGATGTTTACAGAGGCTGCGTGGCAGATCTTGCCAAAGTCAACACCGAATGGTCAAAGTACATGAAGGCTCTGAAAGAGCTTCTGGAAAAGCAGAATGGCCCAACCAATATACATGATGTGGTGATGCGGCTCAACCTAGAAATTTCTTTTGCTATCATGAATTTTCAATCGCAAGATAAGCTGAAGGAGGTTAAACAAAAGGCTTCAGAAGCAACAGAGTGTGGGAGCCCTGGGCTGACAAAGAGGTCTACAGAAGATTTCTTCCTGGAAGAAAACAACAGGGAACGAAGGGAGAGTGAATCTCCACAAAGGGTGGATTCCTCCTACTTAAAAACACTTAGCTCAGATTTTTACAAAAAAATGAGGATAGCGGATAACTTCTGGAGTTCTTTGCCCGAAAAGATTTGCGATGACATTTCTGTGACAGACAAAGGTACTGATTGCTGGAATGGTATTGGAAAAGGAAGTTACACAAGCCCTGACGATAGAGGTGATGGTGATGACGTCCCCAACCCAACTATTCGAAAGGCAAATAGAAAACTTGAAGGACTTGTTGATCAACTCTATGCAGCCATAAATGGCAATGACGTAACCCCCAGCGGCAGTGGTACAGATCCTGGGGAAGACCCTAGCGGCTCAGGGAGCGGAAGTGCCAGTGGTGAAGGAAGTTCATATGAAGTGACAACTCCAGATCCGACAACAGCTGAACCTGGCAACGAAATTCCTGATGAGAACGATGAAGAAGTTGTAGTGGCTGGAGGAGTTGAGGAAGAGCTGTCACGTGTGGAGCACAGCTCAGCGCAGCGACAGCTTTTTGAGTGGTGGTCACTCTCTTTAACAGTATGCTTATTGTGCATACCTTTAATAGCATAACAGTTCAGTCCCCACTACCAGGACACACCAAAATAACTGTGTCGGGATACAAGCTCTAGGCCAGCAGTATAAGGTCAGGGCCTTCCCTGAAAATTTTAGTTTTGATACCAGCTGCCCAGAAAGAATACTCTCGAGCCCTAGGTGAAAGAATTGGCAAGGCAAGAGAAGAAACCCTCAAAACTGACACAACCTTCATAAGACCTGCAATATCCAAGATTGAGTTGTCAAGCTATATTTTCAAGGCATTCTTTTATAGGAAGAGTTGTACTTGAGATGAACTGTATATTAATGTGTAATGAATAGTTCAGTTGAGAAAATTATCAGTAAAgacatgctttttttttctttttgtgtatttttgtCAAGTAATTTATCTTTCATACTGACACATCAAGAACTTTTGAAAAGTGTATATAAGTAATTTCATCCCCCATTATTTTTAAAGGATGGGGGAATGAAATGGGTGTGCAGAAGACATATTGTCTTTTCAAAATACTAATGTACCAATTTTTAGTCCATTTTATATGATAAGTTTGTctttaactgaagaaaaaattgacaaccatGGTAAATGTAATGTATGTAACATTCGCTCTCTGTCCCAGCTGTTATGCATTCTCCCCTTAAGCTCAACATATCGGTACATCAAGGTGCTGCAGtgttaaaaaattcaaattatttccttttaTTCTAAACCCTATGTAGTGAAGCAAGAAATAAAGGAAGGCAAAATATGCTTCTTGATATGCTGACCAAATAAATTGTCAACAAGTGGCAAAACAATTAATTGTAGTGAACGAACTTTAAACAGGCAGAAAACAATGGGAAATTACCACCTCCTCCAAAAGTCATTGGTGAAGTTGGGCCGACATTTTTCATCATTGAGGCTAGTGAAGGAAAGGGGAGGTGGTAATCGCTATTCGTTTGAGCTGCGTTAGTTCCTAGAAATTACCTATATTTCTGATTGTCTCATAAAGACCCATGATGAGTGGCGCATCG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P51655	Glypican-4 OS=Mus musculus OX=10090 GN=Gpc4 PE=1 SV=2
O75487	Glypican-4 OS=Homo sapiens OX=9606 GN=GPC4 PE=1 SV=4
Q9Y625	Glypican-6 OS=Homo sapiens OX=9606 GN=GPC6 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005994 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01153 all species →	Glypican	Glypican	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001863 all species →	Family	Glypican	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10822 all species →	GLYPICAN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0009966 all species →	Biological Process	regulation of signal transduction	Interproscan
GO:0009986 all species →	Cellular Component	cell surface	Interproscan
GO:0016477 all species →	Biological Process	cell migration	Interproscan
GO:0045202 all species →	Cellular Component	synapse	Interproscan
GO:0062023 all species →	Cellular Component	collagen-containing extracellular matrix	Interproscan
GO:1905475 all species →	Biological Process	regulation of protein localization to membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08110	GPC4; glypican 4	-	Glycosylphosphatidylinositol (GPI)-anchored proteins	ko00537	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.