Genomic Location: chr6:28984374...29036309
NR annotation: no NCBI-NR hit recorded
Species Porites rus · all data for this species · gene families
| CDS |
| ENSGYQT00005038466 |
| Transcript |
| ENSGYQT00005038466 |
| Protein |
| ENSGYQP00005033391.1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000050 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00801 all species → | PKD | PKD domain | Domain | Interproscan |
| PF00059 all species → | Lectin_C | Lectin C-type domain | Domain | Interproscan |
| PF02010 all species → | REJ | REJ domain | Family | Interproscan |
| PF08016 all species → | PKD_channel | Polycystin cation channel | Family | Interproscan |
| PF01477 all species → | PLAT | PLAT/LH2 domain | Domain | Interproscan |
| PF20519 all species → | Polycystin_dom | Polycystin domain | Domain | Interproscan |
| PF15711 all species → | ILEI | Interleukin-like EMT inducer | Domain | Interproscan |
| PF12248 all species → | Methyltransf_FA | Farnesoic acid 0-methyl transferase | Family | Interproscan |
| PF01822 all species → | WSC | WSC domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002889 all species → | Domain | Carbohydrate-binding WSC | Interproscan |
| IPR000203 all species → | Conserved_site | GPS motif | Interproscan |
| IPR001304 all species → | Domain | C-type lectin-like | Interproscan |
| IPR000601 all species → | Domain | PKD domain | Interproscan |
| IPR002859 all species → | Domain | PKD/REJ-like domain | Interproscan |
| IPR036392 all species → | Homologous_superfamily | PLAT/LH2 domain superfamily | Interproscan |
| IPR016187 all species → | Homologous_superfamily | C-type lectin fold | Interproscan |
| IPR013122 all species → | Domain | Polycystin cation channel, PKD1/PKD2 | Interproscan |
| IPR001024 all species → | Domain | PLAT/LH2 domain | Interproscan |
| IPR013783 all species → | Homologous_superfamily | Immunoglobulin-like fold | Interproscan |
| IPR035986 all species → | Homologous_superfamily | PKD domain superfamily | Interproscan |
| IPR016186 all species → | Homologous_superfamily | C-type lectin-like/link domain superfamily | Interproscan |
| IPR051223 all species → | Family | Polycystin | Interproscan |
| IPR013320 all species → | Homologous_superfamily | Concanavalin A-like lectin/glucanase domain superfamily | Interproscan |
| IPR046791 all species → | Domain | Polycystin domain | Interproscan |
| IPR008979 all species → | Homologous_superfamily | Galactose-binding-like domain superfamily | Interproscan |
| IPR039477 all species → | Domain | ILEI/PANDER domain | Interproscan |
| IPR003915 all species → | Family | Polycystic kidney disease type 2 protein | Interproscan |
| IPR022041 all species → | Domain | Farnesoic acid O-methyl transferase | Interproscan |
| IPR022409 all species → | Domain | PKD/Chitinase domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10877 all species → | POLYCYSTIN FAMILY MEMBER | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0005262 all species → | Molecular Function | calcium channel activity | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0050982 all species → | Biological Process | detection of mechanical stimulus | Interproscan |
| GO:0005509 all species → | Molecular Function | calcium ion binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K04988 | PKD1L2; polycystin 1L2 | - | Ion channels | ko04040 | deepkoala |
Genes whose expression across the transcriptome samples of Porites rus tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Porites rus, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |