Gene detail

Detailed information of ENSHHBP00000001164.1 in Porites divaricata

Genomic Location: chr10:30851815...30864058
NR annotation: no NCBI-NR hit recorded
Species Porites divaricata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSHHBT00000001390

ATGCCCTTGCTGAATAAGAAACCGTTTTCACCTACAAAACCGCCACCAGATCTCAAGCCTGAAGAAGAAGTCTTCGTTTGCCGTCATACAAATGAAGTTTTTCGCGATTATAGGTCGTTTTTTGAACGTACAATTCTCTGTAACAGCCTGCTATGGAGCTGCAAATATACTAGCAAGAGTGGATTAACTTACCAAGAAGCACATGATTCTGAGAAGTCGATCAGAAAACAAGCCCAGAGTCTCCCTGAACCCATCCAACGAGCGGTACTGACTCTGGTCCACCACACTCAGCGTGGCCGGCTGGCTAATTTATGCGATGAAGTGTTTTCCTACATGAAGGATCACTACCAGGAAGGCGAAGAAGTTGAAATCCAGCATCTTTCACAGAGGAGACGTGGTGTCATAACAAGAGTAATCCCCCCTGGAGAAGTTATCAGCCATTCACCAAACAAAACTGACAAGTCAAGGAAATTGTTAACTCCAAAGTCGAGGAAAAATAGCCACtctgaagagaaaattaaatcACCAAAGGAAAGGACAAATAGTTCGAGTAGTTCAGACAGTCAGCCATTATCTTTGCAGGCTAAAAAATGCAATTCAGACAGTGTGTTTTTGTCATCTCCtactggaaaaattgccaagaAAGGTTCAGAAGATACTCCTTCAAAATCAAAATCCCGAAAACACAGTGCTGAAAGTAGTAGTGAAAAGACTCCCAACAAATCAAGGAAGCATTCCTCTAGCGGAAAGGGGACTCCTTCTAAAAGTGTAAGGGATGATAAGAGCACAAAGAAAGTTCCATCTACACCTACTTCCAAGAAAAGTAGCAATGAAAAGCTTGTATCTCCAAAAAATAAGTCTCCTAGTCAGCTAGTGTCACCAAAGGCAAGCAAGTCACCAAGCGGCAGTAAAAGGATGGGTTTGGAAAGTGAAGTTATAGTtattgatgatgatggtaataaTGGTAAAGGCAGCAGTTTGAAAGGACCATCCCCAAAGTTGTTGTCTCCCAAAGAGAAGCCAGTTTATAATTGGCCAGTTGCTGCACTGTATCAGTATGAAATTAGACTTCATTCTGACAGAGGATCCAAAAAGAAGGAGAAGCGACCAGAGATTGTTGTTGTCCAAGCTTCAGTTGTCAGTCGCAGGAAAGGTGTCTTCACCAGGGATAAGCTAAAAATGTTCCTGAAGATCAGCTGTGAAAGGAGTACTCCACATTCAGAAGAAGGCATTTACATTGTTATGCGGGTGTATCGAAAGAAATTTGATCTTGGTGAGCCAGAAATACCATTGAAGTTGTCTTCCCCTCCAAAAGACaagaagcaaagaaaaagaagtcaTGGAGACCAAACAGAAGCTGGACCGGtcaagaaaaagagaaagaggaagAAAGATGAGGAAGCAAGAACTGATGGAGAAGgatctgcaaagaaaaaggCAAAGAAGGAAAAAGATGGCAAACCAAATGAGGGCAAGAATAGGATGAAACTACCACCAGAGGAATTTCGCAGACTCAtggaagaggaaaaagaaagaaagagaaaggaaattgaggaggaaagggaaaaaaagaaactggagaaagaaagggaaaagGCAGCCAACAAAGCTAAGAGAGAGGAAGAAAGAGCAgttaagaaaattgaaagagaCAGGGAACGTGAAAGACAGAAAGAAGAAAAGAGGTTGGAAGCATTAAGGTTAAGGGAATGGAATAAACCAAGAGAAGATCTTGAACTGGATGATTTGAAGGAGTTGCCTAAGACCACTCCAGTTAGTATAAAGCTACCATCGGATCTGTTTGGCGACGTGATGATGGTGTTGGAATTTGTGAACATTTTTGGAAATCTTTTTGATATAAAAGATGAATTTCCTTCTGGCTTGACATTTGCTATGTTGGAGGAGGCACTAACTGAACATGATGCAGAAGGTGTTTATTATGACTTGTTACTCTTTCTTCTTGGAGCAATACTGCGCACTCATCtagaggaagaagaggaagagggACTGGATGGAACACATGACCATGAGCCTGTTGTTGAGATAGATGAAGAGGGTGACCAAAAATCACAAGCGACCGTGTCAGCCTCGGCAACCATGGCAGCAGCCTGGCCCATGCAGTACCAGGGTAAACCTCTTCATGAGTTGATCATGGATCCCTTCACAAGCTCCGAGCTTCTGAGACTGCATCTGTTGTCCTCAGGAGCGCGAATAGGTTGTGGTGAGTCATCATATCGTTGGCAGCGTCGTGGAGGCTTCACTTACAGTGATGATGCTGGAGTAGAGTTTCGTCATGCTGAGCCGCGTTTGTTAAAAGCACTGGTGACTGGCAATATCTATGACATGGGTGCAGAAGAGAAACTCAAAGTGCTGGTTGCCCTGTGCACACAGCTGATCACTTATGCAACTGCCCGAGACTATGTGGAAGATGGCTTTGATCAGTGTCGCAAAGTCCGTCGTGAATGGCAGGAGGACCAGTGGGCGGATCACCGGAGAGATAAGGAGGAGGCTGCTGCGAGGTATCGCCGTAAACAGGAGGAGAGGCAGCGACAGAAGGAAGAGCTGGAGAAACGGAAAAAAGAGAAGGACCAGGAAAGAATAGATGGTGCGAAGGGAGAGTCAAGGTAA

Transcript

ENSHHBT00000001390

AAATCATGCCCGAAGTAGCCACCTTAACACCGATGCGACTGGTAACTTAGAAGGAAGTCTATTGAACATCACGGCATTGTGAGCCAGTTGGACGCACGAGCTGCGTGGCCGGCGGAATTTTTGTGTTGGAAGAAAACTTTTTCATCATTTTCTCTTGACATCACTGCTTGACCACAAATCTTCGTCACAAACCTGCTCCAGGATCTAAGATTTCTTATAGTGGAAATCGTGGCCAGTTTACGCGCGTGTTTGGGAGAGTTTCGCGGTCGACCACCGCACTCTCGTAGTTTGCCAACTCCATGCCCTTGCTGAATAAGAAACCGTTTTCACCTACAAAACCGCCACCAGATCTCAAGCCTGAAGAAGAAGTCTTCGTTTGCCGTCATACAAATGAAGTTTTTCGCGATTATAGGTCGTTTTTTGAACGTACAATTCTCTGTAACAGCCTGCTATGGAGCTGCAAATATACTAGCAAGAGTGGATTAACTTACCAAGAAGCACATGATTCTGAGAAGTCGATCAGAAAACAAGCCCAGAGTCTCCCTGAACCCATCCAACGAGCGGTACTGACTCTGGTCCACCACACTCAGCGTGGCCGGCTGGCTAATTTATGCGATGAAGTGTTTTCCTACATGAAGGATCACTACCAGGAAGGCGAAGAAGTTGAAATCCAGCATCTTTCACAGAGGAGACGTGGTGTCATAACAAGAGTAATCCCCCCTGGAGAAGTTATCAGCCATTCACCAAACAAAACTGACAAGTCAAGGAAATTGTTAACTCCAAAGTCGAGGAAAAATAGCCACtctgaagagaaaattaaatcACCAAAGGAAAGGACAAATAGTTCGAGTAGTTCAGACAGTCAGCCATTATCTTTGCAGGCTAAAAAATGCAATTCAGACAGTGTGTTTTTGTCATCTCCtactggaaaaattgccaagaAAGGTTCAGAAGATACTCCTTCAAAATCAAAATCCCGAAAACACAGTGCTGAAAGTAGTAGTGAAAAGACTCCCAACAAATCAAGGAAGCATTCCTCTAGCGGAAAGGGGACTCCTTCTAAAAGTGTAAGGGATGATAAGAGCACAAAGAAAGTTCCATCTACACCTACTTCCAAGAAAAGTAGCAATGAAAAGCTTGTATCTCCAAAAAATAAGTCTCCTAGTCAGCTAGTGTCACCAAAGGCAAGCAAGTCACCAAGCGGCAGTAAAAGGATGGGTTTGGAAAGTGAAGTTATAGTtattgatgatgatggtaataaTGGTAAAGGCAGCAGTTTGAAAGGACCATCCCCAAAGTTGTTGTCTCCCAAAGAGAAGCCAGTTTATAATTGGCCAGTTGCTGCACTGTATCAGTATGAAATTAGACTTCATTCTGACAGAGGATCCAAAAAGAAGGAGAAGCGACCAGAGATTGTTGTTGTCCAAGCTTCAGTTGTCAGTCGCAGGAAAGGTGTCTTCACCAGGGATAAGCTAAAAATGTTCCTGAAGATCAGCTGTGAAAGGAGTACTCCACATTCAGAAGAAGGCATTTACATTGTTATGCGGGTGTATCGAAAGAAATTTGATCTTGGTGAGCCAGAAATACCATTGAAGTTGTCTTCCCCTCCAAAAGACaagaagcaaagaaaaagaagtcaTGGAGACCAAACAGAAGCTGGACCGGtcaagaaaaagagaaagaggaagAAAGATGAGGAAGCAAGAACTGATGGAGAAGgatctgcaaagaaaaaggCAAAGAAGGAAAAAGATGGCAAACCAAATGAGGGCAAGAATAGGATGAAACTACCACCAGAGGAATTTCGCAGACTCAtggaagaggaaaaagaaagaaagagaaaggaaattgaggaggaaagggaaaaaaagaaactggagaaagaaagggaaaagGCAGCCAACAAAGCTAAGAGAGAGGAAGAAAGAGCAgttaagaaaattgaaagagaCAGGGAACGTGAAAGACAGAAAGAAGAAAAGAGGTTGGAAGCATTAAGGTTAAGGGAATGGAATAAACCAAGAGAAGATCTTGAACTGGATGATTTGAAGGAGTTGCCTAAGACCACTCCAGTTAGTATAAAGCTACCATCGGATCTGTTTGGCGACGTGATGATGGTGTTGGAATTTGTGAACATTTTTGGAAATCTTTTTGATATAAAAGATGAATTTCCTTCTGGCTTGACATTTGCTATGTTGGAGGAGGCACTAACTGAACATGATGCAGAAGGTGTTTATTATGACTTGTTACTCTTTCTTCTTGGAGCAATACTGCGCACTCATCtagaggaagaagaggaagagggACTGGATGGAACACATGACCATGAGCCTGTTGTTGAGATAGATGAAGAGGGTGACCAAAAATCACAAGCGACCGTGTCAGCCTCGGCAACCATGGCAGCAGCCTGGCCCATGCAGTACCAGGGTAAACCTCTTCATGAGTTGATCATGGATCCCTTCACAAGCTCCGAGCTTCTGAGACTGCATCTGTTGTCCTCAGGAGCGCGAATAGGTTGTGGTGAGTCATCATATCGTTGGCAGCGTCGTGGAGGCTTCACTTACAGTGATGATGCTGGAGTAGAGTTTCGTCATGCTGAGCCGCGTTTGTTAAAAGCACTGGTGACTGGCAATATCTATGACATGGGTGCAGAAGAGAAACTCAAAGTGCTGGTTGCCCTGTGCACACAGCTGATCACTTATGCAACTGCCCGAGACTATGTGGAAGATGGCTTTGATCAGTGTCGCAAAGTCCGTCGTGAATGGCAGGAGGACCAGTGGGCGGATCACCGGAGAGATAAGGAGGAGGCTGCTGCGAGGTATCGCCGTAAACAGGAGGAGAGGCAGCGACAGAAGGAAGAGCTGGAGAAACGGAAAAAAGAGAAGGACCAGGAAAGAATAGATGGTGCGAAGGGAGAGTCAAGGTAACACGTCACATCTCACTGCTACATT

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004993 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02791 all species →	DDT	DDT domain	Family	Interproscan
PF15612 all species →	WHIM1	WSTF, HB1, Itc1p, MBD9 motif 1	Motif	Interproscan
PF10537 all species →	WAC_Acf1_DNA_bd	ATP-utilising chromatin assembly and remodelling N-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR047171 all species →	Family	Bromodomain adjacent to zinc finger domain protein 1A	Interproscan
IPR018501 all species →	Domain	DDT domain	Interproscan
IPR028942 all species →	Domain	WHIM1 domain	Interproscan
IPR013136 all species →	Domain	WSTF/Acf1/Cbp146	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46510 all species →	BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 1A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000228 all species →	Cellular Component	nuclear chromosome	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006338 all species →	Biological Process	chromatin remodeling	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0008623 all species →	Cellular Component	CHRAC	Interproscan
GO:0031445 all species →	Biological Process	regulation of heterochromatin formation	Interproscan
GO:0045740 all species →	Biological Process	positive regulation of DNA replication	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSHHBP00000001164.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Porites divaricata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Porites divaricata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →