Gene detail

Detailed information of ENSHHBP00000005235.1 in Porites divaricata

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Porites divaricata · all data for this species · gene families

Sequence

CDS

Transcript

ENSHHBT00000005928

CCAGTTTCTTACTCcagaaaattgaaatttaaaaatttgcAGAAACAAAAAAGCCAGACGTTGACTCGTGGACAgaagtaaaaagaagaaaacctCCATCGACAAAAACAGATGCCAGTAATAAGGGATGATGATTCAGATGATGAAATTGATGACCAGGATATACATAAAATCATGATTGTCACTCAAACTCCACCTCCTGTCAAAAAACATGACCGCACAGGAAATTATGTCACCAGAGTTAAAATGACCCAGGAACTTTCCAAGGCAATAAATGATGGTCTTTACTACTATGAACAGgatCTTTGGGATGATAGTGATGACAGTTACCTTAACAGAAAGATTGTTCTTTCATCTTCATGGAAACGTGTTGAGCTCGTCAGTCAGGACAAATTTAATTACCAGCGTGATGCCCTTGACCCACCCAGGGCTCGTTCTTTCACAGAGGCTGAATTCCCTCCCCCCAGTCCTCCCATCACGGTTCCCCACACCGCGTTATCACCTTCAGCAGAAGTATTCCGTCCGCGAGCTCACACAGCTCCATCAGAGCAGTTGTCTAGATCTCTCCCCGCCATGGTCACTGAACTTCCTACCTCTCTTGAGCATGTGATACCTCGTTATGGCTCGCGCACTCCGAAGCGAAAAGATGTCAAAGTTGCACCAAGGTTCTTCCCTGCATTCAGTAAAGAGAATGTCAGTGATCAAGGtccaaagaaaagaaaaacaaagtacAGTCAGAACCCCCCAGTGGAACATCATGTTGGTTGGGTTATGGGCAGCAGAGAATACCCTCCCCCCAGAAGTCCAAGTTATAGTATCTCTGAGGGTGTACCTCCTGGGGTGCATGTTGGTAGTTATGGTTCAACGCCACAACCAATCCCACGCTTCCAGCATCCCTCTCATGAACTTCTTCAGGAAAACGGTTTTACTCAGCAACTGTACCATAAATATCACTCCAAGTGTCTAAAAGAGAGAAAGAAGGTAGGAATTGGTCAATCACAGGAGATGAACACAATGTTTAGATTCTGGTCATTCTTTCTCCGATCCCACTTTAATAGGAAAATGTATGAAGAGTTTAAAACATTAGCAGTAGAAGATGCTCTGGCTGGTTACAGGTATGGTCTAGAATGTCTCTTCAGGTTCTACAGTTATGGTCTTGAAAAGAAGTTTAAAGCTGACCTATTCAAGGACTTTCAGGCCGAGACTATCCGTGATCATGACTTAGGTAATCTTTATGGTCTAGAGAAGTTCTGGGCATTTCTTAAATATTACAAAGGGAAAACAAGGTTTGAAGTTGAACCAGATCTCAAGAAGCGGCTTGCTAAGTACAAGACGATTGATGACTTCAGGAATGATCCAATGAATCAGTTTCCTGTCGACCCGCACAGTAACAAACCACGATCCAGACACAGCTCACACAGCGACAAACACGACCGTCATCCTCATGAGAAGGACGAACAAAAAGAAACTAAACCAGAGCATACCCAGGGGAAGGATGAACAGAAAGAAAGGATCCAAGATAACCAGGCTGCAGCCAAGGATGATAAAAAGGCAGGAAAAAGTGAACACCCGACTCCTGGCACAACAGCTGGCAAGGATGAACAGAAAGACACCAAACATTACCATCCTCAGAACAAGGAGGAACAGAAAGGAAGCAGGCATTATAAACGCAAGGAGGAGCACAAGGGATCTAAGCATGAGCATCATTCTAAAGGCAAACACGAGGAGCATAAGGGaaacaaaactgaaaagaaGAGTTACAAGAGCGGCGAAAGCAGTAATGCAAGGAAGAAGAGCTCCGAACATAGGGAGGAAAAGGTTAGTACAGTAGCGGCGAAGGACAAAACCGTTGCTACAAGTgggaaacaaagcaaaacaaaaccagCTGCAGAATCCACTCCTGACAAAGACACTTTGAATCAGGGTGCTTCCGGCACTGCTTCTTCTGCGCCCTTATCCCAGGAAAAAACAGAAGTCGACAACAGCTCAAGAGACAAACAGGATGCTGCTAAGGTTGCATCAGTTTCTGAAAAATCTAACACGTAAGAATTGGCAGTCCTCATGTGACAGTAACAGAACATTGGATTTTAGATATGATtctatcaaaaacaaaaaatttaaaattgaagaaaactaccaaaaaaatttaaaagataTCCGGCAGAACGTCAATGGAAAACACTATGCTCTCTTTTGAAAGTGGCATTGCATCGCGAGGGAAAAGAAAACTACTGCTGCCAACCGTGGCAAAACATTGTAATGGACATGGAACGTCTCAAGCACTGTCTGTTGTTGTTGCACAACTCTGTAGAGTGTGTGATGGTAGTCTTGATCGCAGAACTGTGCTGTCAAAGCT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21071 all species →	LARP1_HEAT	LARP1 HEAT repeat region	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006607 all species →	Repeat	LARP1-like, DM15 repeat	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan

PANTHER

No PANTHER signature was detected for ENSHHBP00000005235.1. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

GO term	Category	Description	Source
GO:0000339 all species →	Molecular Function	RNA cap binding	Interproscan
GO:0048255 all species →	Biological Process	mRNA stabilization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18757	LARP1; la-related protein 1	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.