Gene detail

Detailed information of ENSHHBP00000012861.1 in Porites divaricata

Genomic Location: chr2:16039223...16060970
NR annotation: no NCBI-NR hit recorded
Species Porites divaricata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSHHBT00000015197

CCACCTGGAAATGAGATGtgtaataattttatttatatcatcaaatCAATGAATGATGGACGCTTGAAATTGCATAAAGGTGGGGTTAtttttaaagcaaacaaaacaggAAAAGTAGATCAAGCTACAGTTGCAGACATTGAGTCGACTCATTGGATGAGAGTGGCACGGGGATTTGAACTAACAGTTGCTTTGAAAAGTGGACTACAGTTAAAGCTTGAAGGCTTCAAAGAGTCTGACTATGACCAACTATCAACGTTTCTTCAAAAGTATTTCAGTATGGAACTGGAGGAAATTGAACTGTCCGTAAAGGGTTGGAACTGGGGAGTCGCAAAATTCAAAGGGTCTTCTCTTTCTTTCGAAGTTGATGAAAAGCCTGCATTTGTTGTTCCTTTAAAAGATGTTTCCCAGGCAACAACTGGTAAAAATGAAGTCACTCTGGAGTTCCACCAACATGATGATGCTCAAATTTGTTTAATGGAGATGAGATTTTACATCCCAGCCACATCTGATAGCACTTCAGAAGATCCAGTCAAAAATTTTCATGAACGGGTTCTTGAGAAAGCAGACATCATTCAAGCAACAGGAGATGCCATTGTTACGCTACCTGATGTGGCCTGCCTCACACCAAGGGGTAGATATTCAATGAAAGTGTTTCCATCCTTTCTTCAACTTCATGGCAAGACCTATGACTACAAGATCCCTTACACATCAGTGTTGCGGCTTTTTCTCCTCCCACACAAAGACCAAAGATTTATGTTTTTTGTGGTTAGCATGGATCCTCCAATAAAACAAGGCCAGACAAGATATCCATTCTTGATTATACAGTTTGAAAAGGATGCAGAATTTGATGTAAAGCTTAACTTGGaggaattacaagaaaaatatgaaggcaAGATAACTCAAGAAATGACTGGTCCGATATATGAGATTGTGAGCAGACTCATGAAAGCTGTTATTGGAAGAAGAATTACAGTTCCTGGAACATTTAAAAGCCACACAGGAAACAGTTGTATAACCTGTTCATACAAAGCCGGAAGTGGAATGCTGTTTCCATTGGAAAGAGGCTTCATATTTGTTCATAAGCCTCCTGTACATGTACGCTTTGATGAGATATCCTCTGTGAACTTTGCTCGTGTGGCAGGGGGGGCAGGATCGAGTCGATCGTTTGACTTTGAGGTGGAGACTAAATCAGGGACCACTTACGTATTCAGTAGTATTGAAAAAGAGGAATATGGGAGGCTCTTTGATTTTGTTAGTGGAAAGCATCTGAGAATCAAGAACACTGGCAAGGTGTCGTCTAAAAAGTATGAAGATGAACTGATGGCTGGTTCAGATGAGGATAGCCATGATGCTTATCTGGAGCAGATGAAAGCAGAGGGAGCTGAAAGAGATGACGATGATTCAGAGTCAAGTGAAGGAGGTCTGTCTTTGAGTAAATTAATAGACTGTATTTGGTGGAATGTTATCGTCAGGTTTGAGAGCGACCCATCGTCTTCTGAGAGTGGATCTGGATCCGACGAAGAAGGTAAATCAAAtcaaaaagaaaaggagaagaagaagaaatcacctgaaaggaaaaggaaagctACTGAACCAAGCACGAGCAAGTCACCAAAAAAGAAAGCGAAGGTTGCGGCAGAGAAGCCCGAAggcaagaagaaaaagaagaccaAGAAGGATGCAAACGCTCCTAAGCGATCGCTGTCGGCGTACATGCTGTGGCTGAACGAAGCTCGAGGGCAAATTAAACAAGAACACCCTGGCATTTCGGTCACTGACCTATCCAAGGTTGCAGGGGAAAAGTGGAAAAAATTGGAAGATAAAACGAAATGGCAAGAACAAGCGAAAAAAGACAAGTTGAAATACGACGAGGCGATGAAAGCTTACAAGGAGAGCAAAGCGAATGAACCGAAGGAGAGCCCTGAGGAATCCAAACCCAAGAAGAAGAAAGGCCCAGTTAAGGAGATCGTTGGaaagaaagaagacaaaaagaaaaGCTCGCCTCGCAAATCGGGTGGTGGCGAATCACAGAAGTTTAAGAGTGCGGAGTTTGTGGATACAGACGATAGCTCttcagaagaagaagaaaaaTCTAAAGCCAAATCCAAACCGAAACCCAAAGCAAAAGCAGGAAAAGCCAAGAGTAAAAGCAAGAAGGATTCAGACGAAGAATCTGAAGAGGAGGAGGAAtcagaagaagaggaagaagaaatGAGTGAAGGATCTGATTCAGATTAA

Transcript

ENSHHBT00000015197

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005099 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00505 all species →	HMG_box	HMG (high mobility group) box	Domain	Interproscan
PF03531 all species →	SSrecog	Structure-specific recognition protein (SSRP1)	Domain	Interproscan
PF08512 all species →	Rttp106-like_middle	Histone chaperone Rttp106-like, middle domain	Domain	Interproscan
PF17292 all species →	POB3_N	POB3-like N-terminal PH domain	Domain	Interproscan
PF21103 all species →	PH1_SSRP1-like	SSRP1 PH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013719 all species →	Domain	Histone chaperone RTT106/FACT complex subunit SPT16-like, middle domain	Interproscan
IPR009071 all species →	Domain	High mobility group box domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR036910 all species →	Homologous_superfamily	High mobility group box domain superfamily	Interproscan
IPR024954 all species →	Domain	SSRP1, dimerization domain	Interproscan
IPR035417 all species →	Domain	FACT complex subunit SSRP1/POB3, N-terminal PH domain	Interproscan
IPR050454 all species →	Family	RTT106/SSRP1 Histone Chaperone/FACT Complex	Interproscan
IPR048993 all species →	Domain	FACT complex subunit SSRP1-like, first PH domain	Interproscan
IPR000969 all species →	Family	FACT complex subunit SSRP1/POB3	Interproscan
IPR038167 all species →	Homologous_superfamily	SSRP1 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45849 all species →	FACT COMPLEX SUBUNIT SSRP1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0031491 all species →	Molecular Function	nucleosome binding	Interproscan
GO:0035101 all species →	Cellular Component	FACT complex	Interproscan
GO:0042393 all species →	Molecular Function	histone binding	Interproscan
GO:1902275 all species →	Biological Process	regulation of chromatin organization	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09272	SSRP1, POB3; FACT complex subunit SSRP1/POB3	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Porites divaricata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Porites divaricata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →