Gene detail

Detailed information of ENSHHBP00000015010.1 in Porites divaricata

Genomic Location: chr3:29741173...29758968
NR annotation: no NCBI-NR hit recorded
Species Porites divaricata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSHHBT00000017397

AAATTAGAGAGTCGTCGGCCATATTGATTTTCCGCATTTGGCGAGAGAGCCATTCTGACCCCTTGTTTACCTTTTTTTCCCCCTCCGTATCTAGAGTTTTGGCCTCTCATTGATAAAAATGTCTGTAGCCGACAAGTTAGACGCCGCTAGGCACTCTATAACGGGCTCTTATGTGGCTAAAGTTGTCTGTAAGTCTTCGAGCCGTGAGGTTATGGGTCCGAAAAGGAAGCACTTGGATTATCTGACCGCGTGCACGCATAATGACAACGTTTCCATACCAAATTTAGCGGAGTTACTATTCGAGCGATGTACAAACTCGAGTTGGGTTGTAGTTTTCAAAGCCGAAAGCACCTTCCACCATTTGATGTCGTACGGAAATGAGAGGTTTATACAATATTTGGCATCAAGAGCCTCCAACTTCAGTCTTGGTAACTTTCTGGACAAAAGTGGTGTACAAGGATATGATATGTCTACTTTTGTGAGAAGATATGGAAAATATTTGAATGAGAAGGCTTCCTCTTACACAGAAATGGGATATGACTTCTGCCGAATAAAAAGAGGGAAGGAAGAAGGTGTTATAAGAACCATGGAAGCTCCAAAACTTCTCAAAGCTCTACCTGTCCTGCAACAACAGATTGATGCCTTACTTGAAGTAGACATAAAGTCAAGTGAACTAACAAATGGTGTGATAAACAGTGTATTTGTACTCCTGTTTAAGGATTTGATCAAATTATTTGCTTGCTACAATGATGGTATAATAAATTTGCTTGaAAAGTACTTTGACATGAACAAGAAAAACTGTAAGGATGGCCTGGACATATATAAAAAATTTATTACAAGAATGGATAGAGTATCTGACTTTTTAAAAGTTGCCGAGGATGTGGGTTTTGACAAAGATGATATTCCTGATCTTAGCAAGGCACCTAACAGTCTTTTGGATGCCCTTGAAAATCATCTACAATCTTTGGAAAAAGGCAAGACGAGCAATCCACCTACATCAAAaCCTCTAACAATCCCGAGCATCACTCTTCCTCCATCTGCTACGGATGCTTTCAGTGCTGGCAAGTTCACAATGAAGTTTGAAGGAGATGATTCTGTGGACACTGCTCCAAAAAGTGACCTTCTTGAAGAGGAAGAAAGATATCTTGAAGCTTTCAAGAAGGCCAAAGAATCTGGGACTCAAGTGCAAGTACCTACTGCCCAGCCAGCCCAACCAGCTCAACCTAACAACTGGGAGTCGTTAGGTGAACCAACACCACCTGTACCTGCCCCAACATCATCTCCTAGTGGTGACCTGTTGCAACTTAATGCTGTATTTTCAGCACAACAATCAAGCTCTACAGCTTTTTCGCAGAGTCCTGCCTTCCCACCTAGCCAGTCCTTCCCTGCGGCTCAAGGATTTGGACAAAGTCCGGCAGTGTCCAATGGCTTTGGTGGGGCACCCCAGGCAGGTCCGTGGGGAGGTTCTGCGGCAACTCCTGGTTTTACCAGTAGTGCCTCTACAAACCCTTTTGATAGCCAAACTAATGATGATTTTGCTGCCGTGTTTGGTCAGCCAGCTGCTGTGAACAGTACTCCAGCCATGGGTGACATTCTAGTTCCTACTGTGTCTAGTACAGGGAAACCAGCACCAACAGTTCCTGTAGAAAATAACATGAACACAGATCAGTCAGGGGGCAACTTACATGCTAGCTTAGATAGAGTTGCCAAGTCCTTAGATTCATTGTCGTTTAATGGTAACCTGAAGGGTTCATCTGGTAAAGCACAACACCAGTGGACTGCACCAGCACCTCAAAGCAAAACGGGTGGGCCAAACTGGCAGCCACCACCCACCTCAAGAATGTCTCTTCTCCAACCAGGAGTGCAGGGAGGTTTTATGGGTGCTACTCAGCCTTCTGTTCAGCAACCAACTGGTTTTAGACCACCTTTTGCAGCTCAGCCAATGGGACAACCTTTCATGCCAGGCCAACCAGGAGTGTTCCCCCAACAAGGCTCATTTCCATCCCAACCATTTCAGCCACAGAGACCAGCACAGCCTACGGCGGACCCGTTTGGACCAATACCTGGTAGTCAGGTTAGGTTCTGAATATGAAACATTCTGTGGTATAACAGATGATAACTTAGCTGATAGATCTGTAATAAGTCTTTTTACATTGTACCTTAAACTGGATCTTAATTGGTAGCAACATTTGTAATAGCCAAGCTATTTTCAAATATCGAGGTTTTTGTAATTCACGATATGCTTGATAACTCGTTCCCAGACATTCTTTCATGAAACCACACTGGGTGGCATtccccactttagaaacgagaaagGAACTGCGGCCTATATGTGgtccgcaattgtttctgggatcattTTATTGGGAGGAGCCAGTCTGCTATcggccaatttttttcccttccCTACTAACAATCCCAGAAGTCTCTGCAAAAGTTAACTTGATCCAGTTTTCTTGTCGTTGCTAAAGTGGGAAATAGggaaaacattttaaacatGAAGTTATCCATGAGCATACAGCCCTTACTCTGACAGGTAAAATTGATTCAGCTACTCCTGAATCCAGATATTCTTTGAAATGGCTtggaaaacatttcaattgCTGTTATATTATTCAATCTGC

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004111 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07651 all species →	ANTH	ANTH domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011417 all species →	Domain	AP180 N-terminal homology (ANTH) domain	Interproscan
IPR008942 all species →	Homologous_superfamily	ENTH/VHS	Interproscan
IPR045192 all species →	Family	Clathrin coat assembly protein AP180-like	Interproscan
IPR013809 all species →	Domain	ENTH domain	Interproscan
IPR014712 all species →	Homologous_superfamily	ANTH domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22951 all species →	CLATHRIN ASSEMBLY PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005543 all species →	Molecular Function	phospholipid binding	Interproscan
GO:0000149 all species →	Molecular Function	SNARE binding	Interproscan
GO:0005545 all species →	Molecular Function	1-phosphatidylinositol binding	Interproscan
GO:0005546 all species →	Molecular Function	phosphatidylinositol-4,5-bisphosphate binding	Interproscan
GO:0005905 all species →	Cellular Component	clathrin-coated pit	Interproscan
GO:0006900 all species →	Biological Process	vesicle budding from membrane	Interproscan
GO:0008021 all species →	Cellular Component	synaptic vesicle	Interproscan
GO:0016185 all species →	Biological Process	synaptic vesicle budding from presynaptic endocytic zone membrane	Interproscan
GO:0030136 all species →	Cellular Component	clathrin-coated vesicle	Interproscan
GO:0032050 all species →	Molecular Function	clathrin heavy chain binding	Interproscan
GO:0048268 all species →	Biological Process	clathrin coat assembly	Interproscan
GO:0072583 all species →	Biological Process	clathrin-dependent endocytosis	Interproscan
GO:0098894 all species →	Cellular Component	extrinsic component of presynaptic endocytic zone membrane	Interproscan
GO:0030276 all species →	Molecular Function	clathrin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20044	PICALM; phosphatidylinositol-binding clathrin assembly protein	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Porites divaricata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Porites divaricata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →