Gene detail

Detailed information of ENSHHBP00000018370.1 in Porites divaricata

Genomic Location: chr4:3035282...3051442
NR annotation: no NCBI-NR hit recorded
Species Porites divaricata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSHHBT00000021540

taatactgTTTTACTGTTTGAAAAAATACTACTTATTTCAAATTCTCAAGTTGTCATTTTTTAAGCAGTTAAAATATGTCTGCAAGAGGTGCACGATCAGAGTATGTGGAAGAGTTGCATCTGCGTCAGGAACAATGGGCAGCCACACAGGCTACAAATTATCTGGACTTCATGGCAGACATGGATATTTATCGTCATCCCCGCACCATTCGTAACTCAGGCCTCATTTGCACCCTTGGTCCTGCCTCAAGAGATCCAAAGATCATTTCTGAGCTGATTGAAAATGGAATGAACATCGCAAGATTGAATTTCTCACATGGGACACATGAGTATCATGCAGAGACCATTGCCTTGGTGAAGCAAGCAAGAATTGAAGAATGGCCCCATGCTGTCGCCATTGCACTTGATACCAAAGGGCCAGAGATCCGGACTGGACTGCTAAAGTCGGGGGGTAGTGGAGAGATCTCCCTTGAAAAGGAAGAATTACTGAAACTTTCCACAGACAAAGCACATTATGACCAAGGAGATGAAAACACCATCTTTGTTGACTACCAGAATATCACAAACGTTGTAAAAGAGGGGCAGATTATTTTTGTGGATGATGGATTGATCTCTCTGGAAGTTGTGGATGTTGGGAAAAGCTATTTACTGACCAAGGTGCTAAATAATGCGAAACTTGGCAGTAAAAAAGGTGTTAACCTGCCTGACGTTGAAGTAGACTTGCCAGCATTGTCAGAACAGGACATCAAGGATATTCATTTTGGTGTTGAACAGGGGGTGGACATGATATTTGCTTCATTTATTCGCAAAGCTCAGGACATAAAAGACATACGCAGGGTATTGGGTGAGAAAGGCAAGGGAATCAAGGTAATCGCCAAGATTGAGAATCATGAGGGAGTAAGAAAGTTTGATGAGATCATGCACGAAGCAGATGGTATCATGGTGGCTCGAGGAGATCTGGGCATTGAAATCCCACCGGAGAAAGTGTTTTTAGCCCAGAAGATGATGATTGGTCGATGCAACAAGAATGGAAAGCCAGTTATATGCGCTACTCAGATGTTGGAAAGCATGATTCATAATCCTCGTCCTACTCGTGCTGAGGGTTCAGATGTTGCCAATGCTATTCTGGATGGAGCTGACTGTGTCATGCTTTCTGGTGAGACCGCAAAAGGTCGTTATCCAGTAAAAGCCATAGCCATGATGCACAAGATTTGCCGTGAAGCAGAGGCCGCCATCTTTCACAGGCAGCTGTTTGATGACTTGAGGCACTCTATGAACAGAGTCGCAGATACTCACGAAACAACTGCCATAGCTGCAGTGGCTGCGTCATTCACAGCTAATGCGGCATGCATAGTCTGTCTCACGCACACGGGAAAGACTGCTGAAGTTGTGTCGCGCTTTCGTCCCCGTTGTCCTATCATCGTGGTAACACGTGACGCACGCGTGGCACGCCAGATGCACTTGTACAGGGGCTGCTTCCCGCTCATTTACGATAGACCGCCAAAAGAGAACGTGCTTGAAGAACACGATGAGCGGCTTGAATTTGCGCTGGACATGGGAAAAAGGATGGGATTCATGAAAGTAGGAAACGCGTTTGTGTTTGTGTCGGGTTGGAAGGCTGGTGCTGCTCATACCAACACAATCCGCATCCTTACTGTCATGGAAGAGAAGATTCATATCGCCAAGAGTCTTTCAGAGTCCGCAGATTTTAAAGGGAGGATGCAAAACTTGACCGTGCCCTAGGCGTTACATTTGCCAGCAGGAGAACTCTCAGAAGTTTTAACTTGGTGTGGTTTTTGACAGTCTGAAACATGTAGACGATGCTGAATTCAATAGTGCTGGGAAATAGACTATTTATCGTGTATTTGGATTTTTTTATCACCATGAGCTTTCGTTTCAGTTGCCAAACTACAGGCTAAGGCGGTTGGTGTGAAAAAGGCAAACTGATTAAACTCATTCTCAGTTGTTATTATTGATTTATAGTTGCATTTTGTTTTTTCCATGTGGTTCAGA

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003880 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02887 all species →	PK_C	Pyruvate kinase, alpha/beta domain	Domain	Interproscan
PF00224 all species →	PK	Pyruvate kinase, barrel domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036918 all species →	Homologous_superfamily	Pyruvate kinase, C-terminal domain superfamily	Interproscan
IPR015806 all species →	Homologous_superfamily	Pyruvate kinase, insert domain superfamily	Interproscan
IPR001697 all species →	Family	Pyruvate kinase	Interproscan
IPR040442 all species →	Homologous_superfamily	Pyruvate kinase-like domain superfamily	Interproscan
IPR015795 all species →	Domain	Pyruvate kinase, C-terminal	Interproscan
IPR011037 all species →	Homologous_superfamily	Pyruvate kinase-like, insert domain superfamily	Interproscan
IPR015813 all species →	Homologous_superfamily	Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily	Interproscan
IPR018209 all species →	Active_site	Pyruvate kinase, active site	Interproscan
IPR015793 all species →	Domain	Pyruvate kinase, barrel	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11817 all species →	PYRUVATE KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004743 all species →	Molecular Function	pyruvate kinase activity	Interproscan
GO:0006096 all species →	Biological Process	glycolytic process	Interproscan
GO:0000287 all species →	Molecular Function	magnesium ion binding	Interproscan
GO:0030955 all species →	Molecular Function	potassium ion binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00873	PK, pyk; pyruvate kinase	EC:2.7.1.40	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Porites divaricata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Porites divaricata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →