Gene detail

Detailed information of ENSHHBP00000024032.1 in Porites divaricata

Genomic Location: chr5:7905336...7933037
NR annotation: no NCBI-NR hit recorded
Species Porites divaricata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSHHBT00000028139

ctttatcAGATCACTGTGAAAGAATTCAAAGAACACATAGCATCTGAAGTGAACATACCTGAAGATAAACAAAGACTTATTTTCAAAGGAAAGGTCCTACAAGATGACAAAAAGCTTTCAGAATATGGTGCTGATGGTTGCGTGATTCACCTTGTTGAAAGAAGACCTCAAACTGGGGGTGCAAGCTCTCAAGATGGTGCCAATGGATCAAGTACCTCTACCAGTTCAACATCTCAGGGAGGTGCCTTTAATCCTCCCAACATTGTAATGGGAGCCTTCTCCATGCCAGTGGATGTGGTGGGAGCTACTCAGCAAATAGTTCAGAGCTTGGTGAATCAGCTTGGTGTAGACTCGGCCCATGCTAACATCAGCACCTCGTCATCTGATGATGGGTCTTCAGTCAATGTCCATATTAACCTTCAAGCAACAACTCAACCTGGAAATGATGTGTCTCAGAGGATAAACAGGGCAAGGCATTTCATAAGAAGAGCATCCTCTTGTCTTAATAGGACTGAGGGTGAAGGCGTCCTTCCAATGGACACCTCAGAATCTTCTGATGCTCCAAACACTTCCCAGGCTCAGGGTACATCTGCTGAAGCTGGAAGAACACCAGCCCTTTCCAGTTCAGCAGCATTGGCAGAGATCTTAAAGGAAGCAGGGGAGTCAATGACATCCATACAAACATCCATGAATCGTTATGTTTCTCTTCTAGAAGCAAACACACCTGAGAACTTGGAACCTTCAGAGGAAACATTGCCTGACCGAGTAGCTGAAGCTTTGCACAGTCTTAGCCATGCTTATCATGCCCTGTCAGATCTCACATTCAATTTCCGCGGTCCAGAGCCAAGGAGACCCAGTGTCCTTACATCACTATCTCCACACATTCCACAAGTACCTATGCTGTCTAGTTTTGTGGGGGCACCTCAGTTGGTTCCTACCCAATCAGCAACAAATCCTCCTGTTACAGCATCACAGGCTACCCCAGCTGCTGGACCTCCGGCACAGGGAACCAACCAGAACTTGCAAATTCATGTAAATCCCCAAGGTGGAATCTCTTTAACCACTATCATATCAAATGTTTCACGTGTGGGCTCTACTGCTCCAGCTAGTACACAGCCATCCTCTTCAACAACATCCACTAGTGGATCACGGATGAGTGCAAGTGCAGATAATGGGGCAGCAAGAGAGACTTTCTCAAGTTCATTTGGTGAGCAGCGATCGTCTGTGGGTACAAACACAAATGGAAGTAGTTCTACTCAGTCCACACAGACTGGACAGCCTAGTGTACGGACTCGTATCATTGTTGATGATTTCATTGCATTAATTTCCAATGTTCCAGCATCTGTTGCTGCTGCTGCAGCAGCACAGGGGCAGGCCCCCCTGACAACTCAGGCTGGGACTCAGAACCAGCCTCAGGTGCAAGGACAGGGTGTGTTAGGCACAGCTTCTCCTTCAGGTCAGTCACAGCCCCTGCCATCTACTCCAGTGTCAAGAACTGGGGTGCCAACTGCACCAACAGGACAAGGCCAACCAAGACCCCAGGGATTACCAGGTGCACTTTCAATGAATGTTATGTCTGGTATGGCTGCAGCGAATTCCAATCACCCTGACCCATCCTTACCCTGCCAGTCATTTCATTTTGGACCCCAGGCACAGCGATCCCAGACTGAGCAAGCAAGCCAGCCAGCTGCCACCACCCAGCCATCTGCAACCACCATAGCTGCAGCTACTGCTACTACCACCCAATCTCAAGCTGCAGAACAACCTCCAACACAAACTACTGCTCCTGTCAACCCACCACAACCACAGCCTACAACTGAACCATCAAGACCACGGCCAGAACGAAGAAGTAGAGGTCGTGATCGCACAATATCTCCTGCTGATCTGCAAGGAATACTGGGGATGATGGCTCATGATCAACGCACTGGTGCAAGAGGAATGCCATCATTTCCTGCTGGTTTATTTTCATCAAGAATGCCAAGCCAAGGCCCAAGGGTACTTGTACTTACAGTtgtcattatttttaaaaaaatgataacaGGAACCCAAACACAAACAATACAGTCGTTGATCCAAACCATGAGGTCAAGAGGAATTGAAATTCGTGACGAAGAGGGATTGGTGTCAGCCCTCTTTCAGCGACTGACGGCTGTGTTGACACTTGAAGACATGATGGGTGTAGTAATGGGCTCCGAGGATCCGTTTGAACAGATGCTGCCAGGACTGATGTTGTATGTAAAAGAGGATCTCTTGCATGGACAACCAGACACTAATGAGAACATTAAGGTACGATATTCAAGGGCTGTTCCAACCAAAGACAACATCGACATCACTGCATCAGCTCAAAGTTTTCTCGAGAATTACATCAGATCTGCGGTGGATTTAGTATTATCGTCAGACGACAACCCAAGATTTGCTGAATACTTTCATGACCACATAAAGACCACAGCTGCTGAATTCTTCACTCTGTTAGTGTTCTCATACAGAGATGGCTTTGATGGAGTGGAGCAAGTCGTAAGAAATAGAGTGCCTCAGTCACCCCTAACAGCAGAAATGGATGACCACTCCCGAGAGATGCTGATTCAGTTGTTGCTAAGGAACATCAGGCAGATGTATTACAGTAGAGCTTACTGTGAACCCAGGCTACAGCGGTTTATGATCCGTGCACCGCCTCCTAAGCCCACACCCCCCGCCCCTTCTAAACCCCAGCCCCCACCGAAGGCAGACCTTGAGGAAGAAACCGTCGCCGTTGATGTGAAAGCTGAACTGGACGGGGAAATGGATAGTCACGGCTCTGATGATTCAGAGAATTTTAGTACTCCCCCCGGATCGATCGTAGTAGCCACAGAGTCGGATCGGATAGAACCAGAATGTCCGGTGGGGGAGGAAACAATGGAAGAAGACCACGCGGACGACGAATGGAAAACTATCATGCCTCAGGAGTGGATACCCGTGATCACCACAGACATTGTGCGACAGAGAAGAATGCCTGCTCAGGCACCTTTCAGTGATGCTTACATCAACGGTCTACCTCCTAAGAGGCGTAAGATGGTTGATCAGCGAGGAGTCACTCCAAGCGAGGACAGCATTGGCGACGCATTAAAACACGCCGCCGCAGCTACCGGGGCTACGCCTTTGACCAGTATGGAAGATCTTACCAAAGCCACAAAGGAAAATCGCAAACTCCATGGAGCATACCGAAAAGAGGTTAAGAAAGAAGTAAAGACAAGACTCGAAAAGGACTCTGATTACCGTCCTGATAGGTTCCCACAAACAAGAGATTATTTCGACAGGGATACTAAATGCCTTTGA

Transcript

ENSHHBT00000028139

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004988 (this species only) · gene tree & orthology
Ubiquitin family	ULD\|UBL\|NEDD8 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20960 all species →	Bag6_BAGS	Bag6, BAG-similar domain	Domain	Interproscan
PF12057 all species →	BAG6	BCL2-associated athanogene 6	Domain	Interproscan
PF00240 all species →	ubiquitin	Ubiquitin family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR000626 all species →	Domain	Ubiquitin-like domain	Interproscan
IPR048926 all species →	Domain	Bag6, BAG-similar domain	Interproscan
IPR019954 all species →	Conserved_site	Ubiquitin conserved site	Interproscan
IPR021925 all species →	Domain	Large proline-rich protein BAG6	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15204 all species →	LARGE PROLINE-RICH PROTEIN BAG6	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0030433 all species →	Biological Process	obsolete ubiquitin-dependent ERAD pathway	Interproscan
GO:0031593 all species →	Molecular Function	polyubiquitin modification-dependent protein binding	Interproscan
GO:0051787 all species →	Molecular Function	misfolded protein binding	Interproscan
GO:0071818 all species →	Cellular Component	BAT3 complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSHHBP00000024032.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Porites divaricata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Porites divaricata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →