Detailed information of ENSHNZP00000020719.1 in Turbinaria reniformis

Genomic Location: chr5:32351322...32388700
NR annotation: no NCBI-NR hit recorded
Species Turbinaria reniformis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004236 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF12717
all species →
Cnd1non-SMC mitotic condensation complex subunit 1RepeatInterproscan
PF12922
all species →
Cnd1_Nnon-SMC mitotic condensation complex subunit 1, N-termRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR032682
all species →
DomainCondensin complex subunit 1, C-terminalInterproscan
IPR016024
all species →
Homologous_superfamilyArmadillo-type foldInterproscan
IPR011989
all species →
Homologous_superfamilyArmadillo-like helicalInterproscan
IPR026971
all species →
FamilyCondensin subunit 1/Condensin-2 complex subunit D3Interproscan
IPR007673
all species →
FamilyCondensin subunit 1Interproscan
IPR024324
all species →
DomainCondensin complex subunit 1, N-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14222
all species →
CONDENSINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000779
all species →
Cellular Componentcondensed chromosome, centromeric regionInterproscan
GO:0000799
all species →
Cellular Componentcondensin complexInterproscan
GO:0007076
all species →
Biological Processmitotic chromosome condensationInterproscan
GO:0010032
all species →
Biological Processmeiotic chromosome condensationInterproscan
GO:0042393
all species →
Molecular Functionhistone bindingInterproscan
GO:0000278
all species →
Biological Processmitotic cell cycleInterproscan
GO:0005634
all species →
Cellular ComponentnucleusInterproscan
GO:0030261
all species →
Biological Processchromosome condensationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K06677YCS4, CNAP1, CAPD2; condensin complex subunit 1-Chromosome and associated proteinsko03036deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Turbinaria reniformis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Turbinaria reniformis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
TOP