Gene detail

Detailed information of ENSIHXP00000012901.1 in Madracis auretenra

Genomic Location: chr13:22867635...22907431
NR annotation: PFX29674.1, Transcriptional adapter 2-alpha [Stylophora pistillata]
Species Madracis auretenra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSIHXT00000014078

ATGGAAGTAGGATCGGAAAGAGTTTCCACTCCGATTCGGTCGCCTTCGGAGAAAGATTCCATAATTCTCAGTCGGGCGAGTGCTTCAAGTTCACCCTTCGGTTTCCGCAAGGCCGCATTAAGCCCTCCAACTGGTATTTTACGAAGAGAGTCTTCAGGTTCTTTATCTCCCGAAGGAGATGTCTTCTTTCATAGCGTTGAAGATAAAGAAGATGAGGAAGATTGGGACACTGATCTTGAAATGGAAGaAGGCAAAGAAGAGTATGATGTAACAGGAAGAGCAACATATCTTCAAGCTTGCAGGGATTCTGGAGTCATCCCAGTTTCATATTTTCATCGAAACCTGCAAGAAGCTGACATAGACATTAAGCACCATGGTTTAGGACCGATGGGTGCTAAGGCAATAGCTATAGCTTTAGTGACTAATACATCTGTTATCAAGCTAAACCTGTCAGATAACTGGATCGGTGCTGAGGGAGCTGGCTACATTGCTGAAATGCTGCGAGAAAACTGTTATATTGCTGACCTGGATTTGTCGGAAAATAAACTGGGAGTAGATGGAGCAGAATCAGTGAAAGACATCTTACTACACAACTCAAATATCACCAGATTTGTTGCAAGTGGAAATTGTTTTGATGACAAGGCTGTTCAAATTTTGGCGGAAGCAATAAAAAGTAATACCAAAGTGAAGCATTTAAGTTTGAGTCATAATCAGTTGGGAGAGAAAGGAGGCCAGTATCTGGCTCCTGCAGTagCTGCAAATGATACAATCGACCATATGGATTTGAGCTGGAATCACTTGAGAAATAAAGGGGCTTGTGCTGTGGCATTATCTTTAAAGGAGAATTTTACTCTGAAAATTCTTAACCTAGCATGGAATGGATTTGGCAATGATGGCTCATTGGCCATGGAAGTAATTGTTCAaatgttattaattttTCCTGGAGCGTACGCTCTTGTGAACGCCATGAAAAATAATCCAGAATCAACATTGATTGAAGTGGAGCTCACGGACATCACAGTAAATAATGACTTTGTAGAGTTATGTAAGGAAGTACAGCAACTAAAACCCAATATGAAAATCAGACACGGAGGAACAGGAGGTGCACCCTTTAAACCCAAGGGTCGACCAACACCCATGAAAATACTAAAGAACTACATAGAAGATAATAAAATGAGGCTGCTGGATTTATTCAACACTCTGGATAAGGATAAAAGCATGAATATCACTGTAAAAGAATTCGCAGACGGATTAAAGGAAACAGGAATTGACATGAATTATTTTGAGCTGTATAAACTAATAGAGGGTTTAGACAGAAACAAAGATGGCGAAATTAATTACAGTGAACTGGTGATGGGTTCCATGGAGCAGCAAATAGAAGACAGGAAGGAGAGGATTAAAGAAAAGGCACAGAATATGGAGGAAAACACGCAAACGGATAAAGAATTCGATTGGGATCTTCTCAATATAGAAAACAAGTATGAAATATGCATCTCGCTTCTGAAAAAGTCAAAGCGCCAAAACTCCCTTCTGTTTGtagaaaacaaaaacctaaAGAATACTATCAAGAATATGGAGAACGAGCTGCGTGGTGCGAAGGACGCTTTACGCGCAGAAGAGTGCAAGTTTGTTCAGCTGAATGAAAAGTTGAAATCAAAAATGAAAGAAAGACAGGAATTTAAAGTCAAAGAACAAAAGCTCTCCTACAGTGTTATAGTTCTCCAGTCCAAGCTGCAGAAAGAACGTTCAAAGCGTGCACTTCTGGAGGAAAGAATCAAAATAGTTAGCTCCATCATAACGCAAGACGCGCGGATCTCAAAATGGCGGTTCTTGTTGAAGTGCTTTTCCAGAGGAGCTGAAGAGAGGGAGCACTGCAGTGATCACAGCTATGAAATAGTAAGCAACAATTTTCCAGTTTTGGAGAAGAATTGGAACACTCAAGAAGAAGTTGACCTTTTGAATGGCATCTCTGATTGTGGGTTTCAAAACTGGAAAGAAGTTGCCAAACAAGTTCAGAGTAAAACGGATGAAGAATGTGAGGAACATTACATGAGGTGTTACATTGACAAACCTTGTGAAGTTCTTCAGATTTCAGAATTGAGGCCTGTTGCTGCCTGTACGCCATCACCATCCACTGTTGGCATCCCATTTAAAGTGATGGAAGACCCACCACGCCCTCCAATGGACTCAGCAAGAAGTTTGGAAATGTCTGGTTATATGCCGTGTAGGGGGGATTTTGACGTGGAATATGACAACTATGCTGAAGTTGACATAAAAGACATTGATTACTTAAAGTTATTTCTCAattataatatttcattatttAGATTCTATAGAAAACGGGACCTCCGTGATAGTCTCAGGCCTTTTACTCGTCTTCATTCACCTGATGAACATGAAATATTTATCCAAGGATTATTAATGGAAAATTTCCTTAAGAAAGAAGTTATCAGTTTACAAGAATACAGATCAGCAGGGATTCGCACAAGAAAAGGTGCAGAGGTATATGAACGACTGAACAGACGTCGTGAAGAAGACAAAACACGTAGGAAAATGTTAGATGATATCCTTGCTAATATCCAGGACGAAAAAGCTTGTCAAGTATGGCTTCACAGACAGGCAAAGAAACTAATTTCTAATGTATTTTTTGCTGATTTTGAAGGTCGTAAGCCTGCAGCTCGTTTGGACATAACTGGTTCTCCAGGAGTGGAACAGCTTAGACCGATGGAGAGAGAGTTGTGCAGTAATCTGAGACTGTTGCCGCATGACTACCAGAGCTACAAGTCCACACTAATCAAAGAGTACGAGAAACAAGGCTCATTGCGACTCGCTCAAGCTCGCACTCTGATCCGGATTGACGTCAACAAGACTAGAAAGATGTACAACTTTTTTGTGGAGCAAGGCTGGGTTAAACCACCTGATGGCTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8CHV6	Transcriptional adapter 2-alpha OS=Mus musculus OX=10090 GN=Tada2a PE=1 SV=1
Q6AYE3	Transcriptional adapter 2-alpha OS=Rattus norvegicus OX=10116 GN=Tada2a PE=2 SV=1
O75478	Transcriptional adapter 2-alpha OS=Homo sapiens OX=9606 GN=TADA2A PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006289 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00249 all species →	Myb_DNA-binding	Myb-like DNA-binding domain	Domain	Interproscan
PF04433 all species →	SWIRM	SWIRM domain	Domain	Interproscan
PF13516 all species →	LRR_6	Leucine Rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007526 all species →	Domain	SWIRM domain	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR017930 all species →	Domain	Myb domain	Interproscan
IPR001005 all species →	Domain	SANT/Myb domain	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR017884 all species →	Domain	SANT domain	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12374 all species →	TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0003713 all species →	Molecular Function	transcription coactivator activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006338 all species →	Biological Process	chromatin remodeling	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0070461 all species →	Cellular Component	SAGA-type complex	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSIHXP00000012901.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.