Gene detail

Detailed information of ENSIHXP00000014885.1 in Madracis auretenra

Genomic Location: :...
NR annotation: CAH3161742.1, unnamed protein product [Pocillopora meandrina]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSIHXT00000016170

ATGAACGTGTTTCTGGTTTTGTTTTCGTCTTGTATCGTCTCCGCTTATGCTCTGGACGACGACATCCAAATTATCAACGACGACTTCGGTCATTTCCAGGATGACTTGTTTGGTTCACTTCAGTTTGGCAATAACGAACAGAAGGTTTCCGTAGTCGAACGCGATATCCCAACTCACACAGCGACCCGAGTTCGACGTCAAATCGGAGGCACAAGGGTCCAGGACCTCACGGCCAAACAAGACTGTGATGGAATCCTCTTGCAGTGGAATAGGCTCAATTTACCATTCAGTCCAAAGAAACCCACTCAAAACACTGAATTTAGTCATTTTAACATTTATCGGCACACGACATATTTTGACAATGTGTCCCGTATGAAACCTCACGTCTCGGGCGAACGGGACGCATCCCTACAGAACCCGGGAAAAACCAGCTACAAGGACTTGTACCCCCCGGCAAATGTGGACCTTTACTATGCTGTAACAATGGTGAACGGAGAAGGGCAGGAGGAGATATTCGTGGAAGCTAAAAAGGTTTTTTTCGCGGGAGCAGTGACAAAGTCAGGACCTCTGTTCAAACTCGTCCCAGGTTTCCTCAGTCGTGTCGGAAAAGTGTTACATCACAGCACAGCATGGAATCCAAAACGTAACGAATACCTTGTCGCGTTCGATTTGGATGTTGACAGAGATAATCTTCCCGATCAACTTTTCGCGTTGAGGGTCGACACATCTGGCAATATCGTGGACAAACGAATGCTGAATTTTACTGCTAACCTCAATAAAAAAGCAGGAAATCAAGGTTGGCCAAGCGTAGCTTATAATGAGAAGGTCGACGAGTACATGATAGCTTTCCAGTTTCGCAGCGGTTTCAGGCCATACTTCAAtaacaaatatataattatcAGCCAGAGAGTGAGGAGCTGGCAGACGGAGAGGGCGGCCGGGCCTTCGCTGCTCGCGAAGGCTCACGGGAAGGCAGGGCCCACTGATTGGGTCGACGCGACGAATCCTATAATCAAGTACAACATCGTCACAGGTGGTTATGTAGGAGCTGTTGTAATCGCAGTCAATCGCGAAGAAGTCGTAGGTTTGTTCGTTGACGCTGGAGGCAAAGTGCTTAAGTCTGACAGTATCTGTAGCTTCAAGGGAAATGCTTATGAACCAAACATCTTCGTCGACTCAAAAAGGAAAGAATTTTACTTCACCTGTACAATCCAGCGTGGAGGAGTTTCCAACGCCGATTTTAACCTGCGCTCGGGGGTAAATATGTTGGTTCTCACTAAACGCAATGGGACCGGTGCGCATGCGTCTAACACAGAGACCTCGGAAACCAAGAACTTTGTTGGTTATACTAGCAACACGTTCGCAAAGACTACTGGGTACTACAATGAACGCACCGACAGGTTGATCCTGTTTTGGGAAAACTCAGACCAAGGCAAGCCCTTCATATCGACAGCCTCTGTTCTAGTCACTCGTCGGCGCTACGTCCGAGAAGTTAAACAGTACAGTTGCTTAGCAACAAGGCGAGCGAGAACGCCATCGGCAGTTTACTTTCCAGCAAACGGCAACCACTTCCTGTTCTGGCAAGAGCAAGGGCGAGGGACCTGGGTGATCGGAGGAGAACTCTTACAAGGTAACTTGCAACTTGCGTTCGGAAGAATGCAGAAGAATCCTGTCACTCTTTACAACAGCAGGCTTGGAGGTGCGTTTGTCACGTGGCAAGAATCTGGCGTGTTACTGTCCCGGCAGATTATCGTGACCAGACAACTTCTGTGCGATCCGCCCTGCACGTCACAGCAGACATGCGCATTGCAAGATACATGTGTCTCCTCGACTGGAGtttttaaattctcagattcatgtacaattaataatgGTGGTTGTAGTCACGTGTGCACGTCGCTACGTCATTGGAAAGTCCAGTGTTCGTGCCCAGGAGACATGCAGCTTAAGGAAGACGGAAAAACCTGTCAGAGCGACCCTCCCTGTCATGGTAAGACTCCGATGACGAACCCGTCCACTGGAAATGATTATTTCTGCGGAAGGCGCTCAAATAGAGCCTGTCCTGTCAACTCCTACTGCCACGTTTCACCTACTGATGCTTTTGCTAAGTGCTGCCGAGCTCCTTTACCAAGTTATTCCATATTAGTCGCCTCTCCCACGGCAATATGGCAGCTATTTAtggacacaaaacaaaacatagccACTTTTCAAAAGTTGCAGATCAACAATCCCACCGCCCTTGTCGCGCTGGATTATAACCCGGTAGATAAGCGCGTGTATTGGAGTGACGTCGCtgagaataaaataaaacgaaTGTCAGTGAGTGGAGTTGGAGGAGAGGAACCGCTGGTTTGGAAAAATGTTGGAGTCGTGGATGGTTTGACACTGGACGTTGAAGATGACTTACTGTACTGGACTGATATCACTTACCATAGTATAGAGCGAGCAAACTTGAATGGACAGAACCGAAGACCGATACTACAAGGCTTAGATAAGCCGAGAGCAATCATCCTTTATAAGGCTAGAAGGCTGATGTATTGGACCGACTGGGGAACTGTACCAAAGATTGAACGAGCTAATTTGGATGGTGGAAACAGAATGATAATCGTTCGAGGAGATTTACAATGGCCAAATGGTTTAGTTATCGACGAAGCTTCTCAGCGACTCTTTTGGGCTGACGCCGGTCTTGACAAAATAGAGACCTCAAATTTATTGGGCCGAGGACGCCGTGTACTGCTCAGTACTCCACACGTCAATCACCCCTACTCACTCGCCATTCTGAATAACAGATTGTTCTGGAGTGACTGGGAAACGGGCGGTATTCACTCAGTTGATAAAGAGACTGGTAAAGACGTGGTCACTGAAGCCCAGGGCATTGAGCGGCCAACAGCTTTTGCCTTGTTCAAAGCAGCCCCACCAGTTGATTCGAGCGTCCGCTGCCCAGACCCCCGCGACCCGAAAGATGGCTCCAGGAACCCCTCCCCTGAGGAAGGCGATGATTACCCACAAGGCGCAGTGATACGTTACACGTGTTTCCCTCAGTTTGATCTTCATGGTCCCGTGACTCGCACGTGTTTGGCTGATGGCAAATGGAGTGACAAGGCTCCCGAATGTCTCTCTCCTCCTAGATTTCGCCAGGTGCCAAGCAACGAGACTGTTGAAGAAACAGGAAATGCCATGTTTAGTTGTTCCGCTTCATCTTCCGATACAAAAATCACGTGGCTTAAAGACGGCAAAGTCCTCACTGGAGAtaactttgttttgtttaggaGTGGTCTAATGATTATGCGCGCTTACCGCGAAGACAAAGGCTGGTATGTCTGTAACGCAACGAACAGGGCAGGTACTAAATTGGCTCGCGCATATCTGAAGGTGCTGCGACCGCTGGACCCAGATTGTGGCAAACCAACCCTGACAACCCGTGGCAAAATCGTGGGTGGAACGAAGGTGGAGGCAGGGCATTACCCCTGGCAAGTGAGTCTGTGGAACACGAGGGACAAGAAACACTTCTGTGGTGGATCACTTGTGTCTCAGAGATGGATTGTTACTGCTGCTCACTGT

Transcript

Protein

Uniprot

Uniprot term	Description
P35952	Low-density lipoprotein receptor OS=Rattus norvegicus OX=10116 GN=Ldlr PE=1 SV=1
P35950	Low-density lipoprotein receptor OS=Cricetulus griseus OX=10029 GN=LDLR PE=3 SV=2
P35951	Low-density lipoprotein receptor OS=Mus musculus OX=10090 GN=Ldlr PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07679	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF00058	Ldl_recept_b	Low-density lipoprotein receptor repeat class B	Repeat	Interproscan
PF00089	Trypsin	Trypsin	Domain	Interproscan
PF00084	Sushi	Sushi repeat (SCR repeat)	Domain	Interproscan
PF14670	FXa_inhibition	Coagulation Factor Xa inhibitory site	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013098	Domain	Immunoglobulin I-set	Interproscan
IPR000436	Domain	Sushi/SCR/CCP domain	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR001254	Domain	Serine proteases, trypsin domain	Interproscan
IPR000033	Repeat	LDLR class B repeat	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR035976	Homologous_superfamily	Sushi/SCR/CCP superfamily	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR043504	Homologous_superfamily	Peptidase S1, PA clan, chymotrypsin-like fold	Interproscan
IPR050778	Family	Cueball/EGF/LRP/Nidogen	Interproscan
IPR009003	Homologous_superfamily	Peptidase S1, PA clan	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR018114	Active_site	Serine proteases, trypsin family, histidine active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46513	VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004252	Molecular Function	serine-type endopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0017147	Molecular Function	Wnt-protein binding	Interproscan
GO:0042813	Molecular Function	Wnt receptor activity	Interproscan
GO:0060070	Biological Process	canonical Wnt signaling pathway	Interproscan