Gene detail

Detailed information of ENSIHXP00000021409.1 in Madracis auretenra

Genomic Location: :...
NR annotation: PFX26378.1, Nuclear valosin-containing protein-like [Stylophora pistillata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSIHXT00000023101

ATGGCGGACGGCTTCGAAGGAGATTTGGAATCGAAGAAAATATGTTTTGTAGACTGTCATGCCCATATATCAGCTCAAGAATTTAGTGAGGCTGGAGTAAGAGCCATAGTTGGTGTGACAGAGTTTAAAACAGAGTTTGCTGGAATGCTTGAACTTCATGATAGGTGTGTCGGATTAGATTTTACTCCACGGTTTATCAACAAAGAGGAAGATAAAGATGTTCAAAGAGAAGTGTTCAATCAACAGATAAAGCTTGCCCTAGAACTTGATCTTCCTTTGTATGTGGGGGCCAGGAATGTCCTGCTGCATGCTTTTGATGGAAAACCTTCCAATGCTATGAAGGGAGTTCAACAAGGATACTATTTTTCAATCCCACCATCTATAGCTCGCTCTCCACAGAAAGAGAAGCTTGTGAAAAATGTTCCCCTCTCAAATCTTCTCCTGGAAACTGATTCACCAGCCTTGGCAGCTGAAAAACAGGTATTAAGATCTATTAATTATTTCTCACTGGAAATCGACTTGGGTAAAATGTTCGGAATGACGCGAGATTTGGGTCGGAAGAAACAGGAGCGTCGAAGGAGCAGCAATAAACTTCCCAAAGGCGCTTATACCTTGGATAAAAGGCTGGTACCACGAGTTAAAGAGTACCTGAACCAGTTTAGAAAAGGACACCAACCAGATGTTGAAGAACTGGTAAATCACTTGCAGACAAGATATAATGAGTAttctagaagaaaaagaagagctTTTAAGCAATCTGTGGAAAAagTTTGTGATGCCATTTTTAAAGAGCGAGCAGAAGATAACCACCTTCAGGAACTGGAAGAAAGGTTCcttcaaaagagaaaaaattcacCGGACTTCAGAAATCTTAAAGATGACAATGATGAGGATGACAATGAGGAGGAACAGGGAAGTGACAATGAAATTCCAGATGAATCCAGTGATAGTGAGTTATCTCTAGGAGATGAACCACTGATGGAGATGCAAGACACTAACATGATGAATCAGTCCATGCAATCAATGTACAAGGCCACAAGTTCATGTCAAAATTCTGAAGATGAGGGAGGCCTTGAACAGACACCAGATCCTTCCAAAGCAAATGATAGGAAACAAGGTAAACCCTTTACATGTAACTCAAATGTGCACGAAAATGATGAGAAGTCAATAAACAAAATGGACACCTCAGATGTACCGCAAATGTCAATACAAGATACCAAAGCCATGAATAATCTCTCATCTGTGAattttgagCCAGCTCAGTCTTCAATAAAATTCTCAGACATTGGAGGCTGTGACGACACTGTGGAGCAAGTTTGTAAACTGCTGGTTCACATGAGGCACCCTGAAGTGTTTCGCACTCTTGGGGTGACCCCACCCAGAGGGTTCCTCCTTCATGGTCCCCCTGGCTGCGGCAAGACTCTGTTAGCTCATGCTATTGCTGGGGAGTTGGAAATGCCTTTCATCAAACTTGCAGCCACAGAAATTGTTTCAGGAGTGTCTGGAGAATCAGAAGAGAAAGTCAGAGAGCTGTTTTCACGAGCTGTGACCCATGCTCCATGTGTGTTATTCCTGGATGAAATAGATTCCATCACACCTAAGAGAGAAACAGCTTCCAAAGACATGGAACGAAGAATTGTCTCACAGCTTCTTACTTGCATGGATGACCTGAACAACAACCCAGATGCTCAAGTATTGGTTATAGGAGCAACCAACAGGCCCGACTCACTTGACCCTGCCCTGCGACGTGCTGGTCGGTTTGACAGGGAAATCTCCATGGGTATACCTGATGAAAAGGCAAGAGAAAGGATTCTGAGAGTTCTTTGCCAGAAGTTAAGACTAGAAGAAGACTTCTGTTTTGCCCTGTTGGCTCGTCTTACTCCTGGATTTGTTGGTGCAGATCTCATGTCTTTAACAAGAGAGGCAGCCTTAATAGCAGTGAACAGGATATTTCAAGAACTTGAGAGGAAtgcacaaaacaaaattgaaaatgtgAAGGATATAGACCAAACTGGAGAACAAACAGAGTCTTGTGAGGATACAAAGAAACTCTCAGACAATGTTCCCAGGTCATTAAGTGTTACCGAGTGGCTCAAAGAGCAATCACCATTAACAGAGGATGAACTACAGAAGCTTTGTATTAGCATGGACGATTTCAAGGCAGCCCTGTCAATAGTCCAGCCATCAGCAAAACGAGAAGGGTTTGCCACCATTCCAGATGTGACATGGGAGGATGTCGGAGCACTCAGGGATGTCAGGGAAGAGCTTACCATGGCTATACTGGCTCCGGTGAGATACCCAGAAGAATTCCAAGCGTTTGGCCTCACTCACCCCCCAGGTATTCTACTGGCCGGGCCTCCAGGCTGTGGGAAAACTCTTCTGGCAAAGGTACACAAAATGAAGCGCATTGAAACAAGGCCTAAAACGTCAAATAATAACAGTgcttctttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcTCAAAGGACCAGAACTTCTAAACATGGTAGGTTTACACAGTCTGAACGTAGAAATTGCTAA

Transcript

Protein

Uniprot

Uniprot term	Description
O15381	Nuclear valosin-containing protein-like OS=Homo sapiens OX=9606 GN=NVL PE=1 SV=1
Q9DBY8	Nuclear valosin-containing protein-like OS=Mus musculus OX=10090 GN=Nvl PE=1 SV=1
O14325	Uncharacterized AAA domain-containing protein C16E9.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC16E9.10c PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01026	TatD_DNase	TatD related DNase	Domain	Interproscan
PF17862	AAA_lid_3	AAA+ lid domain	Domain	Interproscan
PF16725	Nucleolin_bd	Nucleolin binding domain	Domain	Interproscan
PF00004	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR038100	Homologous_superfamily	NVL2, N-terminal domain superfamily	Interproscan
IPR032466	Homologous_superfamily	Metal-dependent hydrolase	Interproscan
IPR050168	Family	AAA ATPase domain-containing protein	Interproscan
IPR001130	Family	3'-5' ssDNA/RNA exonuclease TatD-like	Interproscan
IPR041569	Domain	AAA ATPase, AAA+ lid domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR031996	Domain	NVL2, nucleolin binding domain	Interproscan
IPR003959	Domain	ATPase, AAA-type, core	Interproscan
IPR003960	Conserved_site	ATPase, AAA-type, conserved site	Interproscan
IPR018228	Conserved_site	Deoxyribonuclease, TatD-related, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23077	AAA-FAMILY ATPASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0042254	Biological Process	ribosome biogenesis	Interproscan
GO:0051973	Biological Process	obsolete positive regulation of telomerase activity	Interproscan
GO:1990275	Molecular Function	preribosome binding	Interproscan
GO:0016788	Molecular Function	hydrolase activity, acting on ester bonds	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan