Gene detail

Detailed information of ENSIHXP00000023355.1 in Madracis auretenra

Genomic Location: :...
NR annotation: RMX40880.1, hypothetical protein pdam_00012017 [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSIHXT00000025356

ATGCAAATTCGAAAGGAATTGTACGAAGCGCGCAATTCATTCAAAAGTGCTTACACAAGGAACGATATTAATCAAATTTTTCGTCGATTTCAGGGTTTGTCCTTAACGAGCGACATGAAACCTGCACACACGCTTTTTCGCGACCAAGTGAGTACACTTGTGGAGTGGTTTGCGAGCTGGAACGAATGTGAACAGACCATAGCTTTGTATACACTTTTGAAGCGCATCACTACCATTCAGGCGAAGTTTCTATCGTTAATTCTGGAGCACACATTTCGGGAGGATTCGTTTGAAGTTCAAATGATGCAGAGACAAGCGAATGACAAAGAATTTTTAGGCAATCTCGTCCGTGAGAGTAAAGATGTCGCAGTAAAACAGCTTCTGATGCACCTCCCTCTGCTAAATCCTCGAAATGACGAGGCAAGATACCAATACCTTCATTTATTGCCCAAGATCCTTCACCACACTGTGGAGCACTGTGTCCATCAAGAGGAGTGTCGCCAGCTCTTGTCATTGGCTGTGGTTCACCCTGCCTTCCCACCGGAGGAGCGGAATACCCTTCATCATTGGCTGAGCCAACTCGATAAGAGCCTTGGGGTACAGGAAAGGATTCAAGCGACCAATTCATTCATAGCAGAAAATTCGGATGTGTTACCAAACACAGGCTGTGAGAACCTTGTAAGGCAAAACTATATGCGAGTGCGAGAGCGCATGAATGGATGGCGCAACCAGCAGCTTGTTCATGTAGACTCTGGAATTGGTGGCTCATTTGAATCACCACCAATGCAAACTCATCTTTCGATTTCATCATCTGTGCGAAAGAGCCGATCAAACTCTTTAACCCCTCCACCGCCAATTGACATACAGGACTCCATATTGGAGGATTTCTCAGAAAACAGTGAGATTGAAATTCGCCCGGGCAGGTCCCAGTCGTTTCCAGTGGATCCTCACAGACTTAATAATTCGCTTTCACCACAATCATCTGTGGACAGTGAGTTTGATGAAAATGGCTGCAGACAGAGAGGAAGTAGCTTCAATGAAGATGCACGGCCAGGCATGAAAGaGGTGGGGTCATGGTTAAAAAACCTAAGATTGCACAAGTATGGCAGTCTGTTTTCTCAGCTCTCTTATGAAGAAATGCTTGGCTTAAATGAGGAGTACTTGGAAACTAAGGGTGTAACGAAAGGGGCCAGGAACAAAATTCTGCTGATGCTTCAACCAGGAAAACTTCAAGGAGTTCTTACCGGACTCAAGGAAATAATAGTAACGCCAATAAAACCATTCACTCCCCCTCCCACCGAGACCACACATTGTGCTTCATACCCCCCAACACTGACATCAGGACAGCAACCGCCGAACATACCTCCCCACCCTGAAGACTTGGCATCACGAATTACGAGAGTTTTGGGTAAAGCTTGCACTCAGATTCTTGTGTCAAGGACAGACGAGGAACATTGTAACACTTACCTTCAACTTTTGGACAGAGTTCTTATGCTTGAGGCATTTACGCAGACTCAAAAACAAAGAATCCAATCATGGAAGCAAGAATGTCAGAGACTTGTCAGACAAAGACGGCCATCGCATGAGAACCGAGCCAGAGGATATTTAACATCTCTTTGTTACTTAATTTTTAGATGGTACAACATGGGCCATAATTCAGGGGATTCCTTAGGAGGGAATCTAGGGCCTCCTGCAGGTTCAGGGGTCATAAACAAGCGTCACAGGGTCTCACCTCGTAATCCTGCTAAGAATCCTGCTGGTCAGCTTCGAAGCAACAGTGCCGAAACACAAATGCACTCTAAACCAAGATTGGTGAGGTCCCATGCTGTTGTGGGAAGAACAAAGTCACTTCCTCTAAAACCAACACAACAGACCAGTGTTGTCCTGCCGCAGCAGCTTTCAGCAGATCTTGAGAACATTGATGATGGCCTAGAGTCGCTTTGTCTTCGTGTTACGGAACATGCACTTTCTGGTGAGTGGCTTGTCTTTGTTTCACCACTTTGTACAGTGAGAGAGGTTCCTTTTTGGTGCCTAAAAAAATCTACACATAATTTTGCTGTATTGTGA

Transcript

Protein

Uniprot

Uniprot term	Description
Q8CBY1	Protein Smaug homolog 1 OS=Mus musculus OX=10090 GN=Samd4a PE=1 SV=2
Q0IHW3	Protein Smaug homolog 1 OS=Xenopus tropicalis OX=8364 GN=samd4a PE=2 SV=1
Q9UPU9	Protein Smaug homolog 1 OS=Homo sapiens OX=9606 GN=SAMD4A PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR013761	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR050897	Family	SMAUG/VTS1 RNA-binding	Interproscan
IPR037093	Homologous_superfamily	Smaug, PHAT domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12515	STERILE ALPHA MOTIF DOMAIN CONTAINING PROTEIN 4-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000289	Biological Process	nuclear-transcribed mRNA poly(A) tail shortening	Interproscan
GO:0000932	Cellular Component	P-body	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0017148	Biological Process	negative regulation of translation	Interproscan
GO:0030371	Molecular Function	translation repressor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K27396	SMG; protein Smaug	-	Messenger RNA biogenesis	ko03019	deepkoala