Gene detail

Detailed information of ENSJQFP00000001285.1 in Rhodactis osculifera

Genomic Location: chr1:19995429...20006731
NR annotation: no NCBI-NR hit recorded
Species Rhodactis osculifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSJQFT00000001333

AGGAAACCCATCAATTAAAGAGGCTGTATGCACAAATTATGGAGAAACATCCTGTGAAGCTATACGTTTACGATATTTCAAGAGGTTTCGCGAGGCAGATGTCTCCAGTTTTACTCGGTAAAAGAATCGACGGCATTTGGCATACTGGAGTAGTTTGTTATGGCAGAGAATTCTTTTATGGTGGCGGTGGAATAGAAAGTTGTTTGCCGGGTGGTACAATTCTTGGCAGCCCAGATGAGATTATAGATCTTGGAGAAACTGAGATAAGTCAAGATATTTTTATGGAATATTTAGGTGGAATTGGATGCCAAAATTTCAGACCTGAAAGTTACCATCTGTTTGAACACAACTGCAATACATTTTCGTCGGAAGCTTCCATTTTCTTGACAGGCAAGAGGATACCTCAACACATCCAAGATCTTCCATCTGAAGTTTTGAACACTGCAAGTGCTGTGTTAAGGAAGCCAGTCATCTTTAACCAAGATAACgTTTCCTCCACTATAACTCGGCTATTCGAATGTCTTCATGAAGAAAACTTCAGTGATCAAAGTTTAAAGATCCTCGGTGAACTAAAACAATTGTGCGAAACTAAAGATCTAGACGAGGTTCAAGAGAAACACATTCAAGTCATTGATCAAGTgatagaaaaatatttttcaaagacAGAACACCCTGTCCTGCTTTTGAGTCTTCAACTTTTACAAGTTTTGGTGCTTTGTGACAGATTATGGGTTCGTTCTCAAGGGATAAAAGAGATCGTGCAAAAATTGTGTGGAAATTATTCTGGAATTAAGCAGAACTCATGTCAAGTTGATGCTGTCAAAATGTTTTGCTGTGCCGTCAGCCATAAACCAGGCCATTCAACCATGTGTACTGGGGACTCCATCCCTCTCTCCAGTGTGGTAGTGAACAGTCTGctaagcaaagacgacgaccTTCTCACACTGGGTTCCGCGTTAGCATCGAACATTGCACGATTTCAGATAGACGAGGACGCAGCGCTGGAATGCTCCACCGCAATTATCGAGGTTCTACGAAGGACTGTCTCGCCAGAAACCGCACACAACTGCTTGTATGCGCTGAGGAGGTTTGTGGAATACAGTCCTGAGGTGGGTGGGTTAGCGAGTGCGATGGGCGTCAACTTAGACAAATTCAAAGGGAACTCCAAAGAGATTGATGAGTTGTGCAATGACTTACAGAGACTGGTTGCGTAACATTCGCTCTCACTGGCACCACATGGCATTCATTGGACAAGTCCGCGGGAGCCTCTGGGGGTAGGGGTGGGGTAAATTTCGTATATTTGTAAAAAGCCattttattaagcaattagattatgagatcGAGATTTCTATCCGATAACGAAGCTCTTATCGAACAAGCCGAatgaaatgattgttttattaattttgctaAACTCAAAATACCGCCGGTTTGgtattttccagcatctcttgcctttttttctgtagaaagctcgcgATATCTACTTTATTCGGCCTTTTTGTCCGAGGGAAATTTTGTTAGCTTCCCAACACTTGccgcaatcactctccatataaagTCAACCTAAGGtgtatgagctgataaccgagacttGGTGAaccagaacggttgaaatgcttTAACCGAGGTTGAAAACTTAATAAGATTAATTGTcactttttgtttcaaatttatttGTTAGAGCTGTTGGTAGAATCTTCATTCGCAAAATAGGCCATCTCTGTGTAGGTGCACAACGTAATAATGGCAATAACGAGACAATTTAAAACTTGGTAAGTTTGTGTTTCTGAGCGCGAATTGAAACCATTACCTTTGTCGTTAACcgcttaaggcctggtatcaaattacaaattctccttttgtgtttccatacatttcttacagaagtagtggggagaagctgttaaaatatcaatagaatttaacttgagtgatcatgttctcaattctcatgacattcctaactgataaacccttgatattgcaaggagaagtttgactcagatcgttgttaggccttaaagggttaagttacaaCTAAACCAAAATTGAACGGATCCATTCTTGGGTCTTGGGTTATACCTACCGAAACCAAAGTGCTTTAGT

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003468 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05903 all species →	Peptidase_C97	PPPDE putative peptidase domain	Domain	Interproscan
PF08324 all species →	PUL	PUL domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008580 all species →	Domain	PPPDE peptidase domain	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR042266 all species →	Homologous_superfamily	PPPDE peptidase domain superfamily	Interproscan
IPR013535 all species →	Domain	PUL domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12378 all species →	DESUMOYLATING ISOPEPTIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008233 all species →	Molecular Function	peptidase activity	Interproscan
GO:0070646 all species →	Biological Process	protein modification by small protein removal	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22762	DESI1, PPPDE2; desumoylating isopeptidase 1	EC:3.4.-.-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.