Gene detail

Detailed information of ENSJQFP00000001470.1 in Rhodactis osculifera

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species abbreviation ROSCU · all data for this species · gene families

Sequence

CDS

Transcript

ENSJQFT00000001523

CATTGGGGGAGGATATAGATTGGAACACACATTTTGAAGGCTTTCGTTTTATTGCAGTTTATTGTGTTGATAAAAACCCAATAGTGGATTTATCCCCGAGAGAAACAAACTTCAAAACAGTAATGGAGGCGACTCGTTGTACGCGATGTTCGAAATTGTGTAGTGGCGAAACCTTATGTTACAACGATGAGCTATTCCATGCAACCTGCTTATGTTGTATTGTTTGTGGAAAAGAGCTAGCAACCATGGGGTTTTTCGTTGAAGATGACCATTTTTTCTGCCCAGAAGACTTTCAGGAGCGTTTTGGTACCAAATGCCATGTTTGCAATCAATTCCTTGAAGGCGAAGGGATAACAGTTGGTGGAAATACATATCATgaaagttgttttgtttgtgctgAGTGTCATAAAACTTTTCCACCTGGTGAAAAGGTTGTATTTAATGGCAAAGACTACATCTGCCAGACGTGTGCAAGCAAGGACCCTGATGACACCAGAGGACAAACAATGGAAAAGTGTGCAGGTTGTGGTGAGGACATTCGCAGTGGACAGGCATTGTTAGCACTGGAGAAACAATGGCATTTGTGGTGTTTTACTTGTACACGTTGTGGCTGCCTACTTGCTGGGGAGTATATGGGAAGAGATGGAAAACCATACTGTGAGAAGGACTATCAGTCAGAGTTTGGTGTAACCTGTGCTGGCTGTGGTGGTTATATTACAGGAAAGGTTCTTCAGGCAGGAGAGAAGCACTACCACCCTCAGTGTTCACGATGCGCTCGATGCCATGGAGTGTTTGGTGAAGGTCAAGAGATGTATCTGCAAGGGTCAGAAATCTGGCATCCCGACTGCAGCTTGGCTGCCGCACAGAATGGTGACCAATCGGCACCGGGAGAAAGAAATGGTTCAAGGGATCATCACCTTGATGATGGAGATCATCGCCCTCCACCCGCCCCAACCAGAACTTCTGCCAGTCGCACGACAGACTGGAAAGTGAAATATTCCCCTCAGAGGGAGGGGGAAAGGACTTACAAAACTGACGGCTGGAGTAGAATCTTTTCATACGACGAGTTAAAGACTACAAACTACAAGCTGCCACGAGAAGTTGACAAGACCAAACTTGAGACTTACCTGTCGGACGAGGACTTTATCAAAGTGTTTTCTGTGACAAGAGATGAGTTCTACAGACTGCCCAACTGGAAGCAACAGTCGCGTAAAAAAGAGGCTTTGTTATTTTAGTCATATCTTCTATGAATACTAATGGCAGGTATTACACTGCCATTCAAAAATTATATCACtggaatgaaatcattattacTTAGATTATAGGCAAAATTTTATTCGCTGAAATTTTCAGTCGTTATTAGTTCATCTACTCCATGTGTCAGAGGTACCGTATTCGCTGTATTAGTTGCTCGTTTCAATGGCGTAAGATTCTCTTGTGCACATTTTTAAACGGATTAGGGGTGGGATACGGGAGGACAGATCATTTACCTTCTCAGCGCCCTCTTCAAAAATTGAACGAGCCCTCGCTAGGTGTGGTGGTGCAGCGAGATGTATCGTAATAGAGCCGACGTTCGGATAACTGTGTACTTGTAAAGATCATGATTGGATGATAACATTTAgaaaatcataaattgattctAGAAAATTGGCATCAAAAAAGGGCAATTAATATTGTTGCCTGAGCAAGTTGTATAAGAATCATATATTTCTTAGATTACTTTTATTAGCTTGAAAGAATGGTCAATTTTGACGAATATTCATTATATAATATGTAGTGTTTTTAAATCATAATCAGTTTTACTTTGCGATATTGGTATAACTTTACGAACACATCTATAAGGAATTGGCTTTTATACGACATATATATTGCAGTAGATCCACAGTATATTAATATGAAACTAGTAATTATAACATGCGTGTCAAATGATATGAAAAATTATGTACAACAAGGAATTAGATTGATGaaaaatttacaataaaaataatgataaaaacgtTTAAGAAATTTAAACCATTTTCCATTTTCAATACGATAATTACGAACAGCAGACTTAAGTATTCTTTGTTCTCagtattcatgaaaaaaaaaaaacatttgcatgCTGGTTGCAGTTGGAGT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00412 all species →	LIM	LIM domain	Domain	Interproscan
PF02209 all species →	VHP	Villin headpiece domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001781 all species →	Domain	Zinc finger, LIM-type	Interproscan
IPR036886 all species →	Homologous_superfamily	Villin headpiece domain superfamily	Interproscan
IPR003128 all species →	Domain	Villin headpiece	Interproscan
IPR051618 all species →	Family	Actin-binding LIM	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24213 all species →	ACTIN-BINDING LIM PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003779 all species →	Molecular Function	actin binding	Interproscan
GO:0007010 all species →	Biological Process	cytoskeleton organization	Interproscan
GO:0015629 all species →	Cellular Component	actin cytoskeleton	Interproscan
GO:0030032 all species →	Biological Process	lamellipodium assembly	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07520	ABLIM; actin-binding LIM protein	-	Axon guidance	ko04360	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.