Gene detail

Detailed information of ENSJQFP00000001687.1 in Rhodactis osculifera

Genomic Location: chr10:7303087...7309522
NR annotation: no NCBI-NR hit recorded
Species Rhodactis osculifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSJQFT00000001749

AGAAAACAGGGAAAGATGGCGGAAAGTTCCGGCGACGAAGGGTCCGCAGATGCGACGTTTGTGTTTTACCGTGATCGAGATCAATGGAAAGACATCACCCCTGTAGAACAGAACGATGGGCCTTTTCCTGTTGTGAGAATTGCATACTCTGAAAAATTCAAGGATGTGTTTGACTACTTCCGTGCTGTGCTTCTCGCGGATGAGCGAAGTGAACGTGCCTTAGCGCTCACTGAAGATGCTATCAGTCTCAATCCTGCCAATTACACCGTCTGGCATTTTAGAAGAGTTTTACTGAAGTCTCTTAACAAGGATTTACAAGAGGAATTGAAATATATAAGTGAAGTTATTGATGAACAGCCAAAGAATTATCAAGTGTGGTATCACAGGAAAGTcctggttgattggttgaaagacccAAGCAAAGAACTTCAGTTCACTGCAAGGATCCTACAATTAGATGCCAAAAATTACCATGCCTGGCAGCATCGTCAATGGGTCATCAAAGACTTTGGTTTGTGGGAGAATGAGCTCGATTATGTAGAGAAACTTCTGACTGAAGATCTAAGAAATAACTCGGCATGGAACCAACGGTACTTTGTTGTATCTAAGACAACTGGTTTTACGGAGGATGTATTGAGTCGAGAAGTGAGATCTACCATGGAGCTGATCAAGACAGTTCCAAATAATGAAAGTGCATGGAATTACTTGAAGGGAATACTCTCACAGAGTGGACTCAGTAAATATCCCAGTCTAAAGGAAACACTGCTGGAAATGTACAATAGCGGCATTGATTCACCTTACGTGATGGCAACTTTGATTGACATCTATGAAGAGGAACTTTTGGATGGACATGATGATTCAATGTGCCTTACACAGGCTCTAGAGTTGTGTCATAAACTTGCTACAGATGTTGACTATATCAGACGAGAGTACTGGAATTACATCTCTCGATCCTTGCAGAGTAGATTTGGTCAACCACAGTAGAGCAATGCCTTATTGTGGGCAAAGATTGTCAGAGCAGTTTTTAATTGTCAAACCAACAGCCTAGTAGGTAGTCATgttttctgtgagaaatgtaaaCAGTACAGTCTGCctgtagatgttttttttgcccTACAGATACTTATTAATTAATGGTGCAATGAATTTTTTGTTCTTTGCCACTGACCCGCTAAGAGAGGAACGGAATAATGAAATGGTAATTAACTAGTATTGTTGTACTTAAGAATTAAGTCCACAGCCTCTGCAAGATTGTTGACGTAACCATCAGGTTTCACTGATGGGTGAGGCTCATCTTGAGGTCTGAAATACAAGAACACTTTAAAGTTTTCATAATGTCGACAATAAGCAGTGAAGCTGTAAATCAGGAGATTTCCTATTCCTTGAGAACTCAAACACACAAGGCTACCATGTTTTGAAGTGGGTTGTTAGGACCACAGTGGAGCATAATTCGGCTGCACTGTGAGGTGACTGCACATGTCACCATAGAATGTAAATTATTATCAGAAAGAAAGGAGGATACTCTAAGTTGACAGAACTGGGCTATCAATAACTAGTCGACATGCAACACCAGTGTATTATGAAATAATATTTGGCTTTCAAATACGATCAAATCGTTAACTAgcaacattttgtttttcaattccagCGTGGCGTGAATTACCGATGGCTTTCTTGATTTAGCTCTATGATAGTCTGTAAGGTTTATGGTTTACTAATAAAGATCATGTGATGGTTGGGTTGGCATGAATACTGTCCAGTGGTTTGTCAAAAATCGACATAATACTCCATTCCTTACACAGGCATATAAACTTCACATAACTATTGCCAGAACCATTGGGTCAAATCCAGCCTGTTTCTTCAGCTAAAAAGCGAGGGCACTTTCACGCGGCACTCTTTTGAAATGGGGATACTCACAACAAATGGACTCTTAATCAATGTTCAGAATGAAGGGTATGATCAGCTTATGGTTCACTTTGTTGC

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007057 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01239 all species →	PPTA	Protein prenyltransferase alpha subunit repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002088 all species →	Repeat	Protein prenyltransferase, alpha subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11129 all species →	PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT/RAB GERANYLGERANYL TRANSFERASE ALPHA SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008318 all species →	Molecular Function	protein prenyltransferase activity	Interproscan
GO:0018342 all species →	Biological Process	protein prenylation	Interproscan
GO:0004660 all species →	Molecular Function	protein farnesyltransferase activity	Interproscan
GO:0004662 all species →	Molecular Function	CAAX-protein geranylgeranyltransferase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005953 all species →	Cellular Component	CAAX-protein geranylgeranyltransferase complex	Interproscan
GO:0005965 all species →	Cellular Component	protein farnesyltransferase complex	Interproscan
GO:0018343 all species →	Biological Process	protein farnesylation	Interproscan
GO:0018344 all species →	Biological Process	protein geranylgeranylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05955	FNTA; protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha	EC:2.5.1.58 EC:2.5.1.59	Prenyltransferases	ko01006	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.