Gene detail

Detailed information of ENSJQFP00000003448.1 in Rhodactis osculifera

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Rhodactis osculifera · all data for this species · gene families

Sequence

CDS

Transcript

ENSJQFT00000003570

CGCTTGGAAAGAGGTCGCTTTGTTCTTGCCCTGGATCAACCGTCTTACATGTCTCTGAACATGGACCAGAGAGAGTTAGCAAGCTCACAAAATCTCAACACACTGCCTGACGATGTGTTGTTCGCCATCTTGCGTTACTGTGACATTAGAAGCTTGTTGGTGTTGGTTCGTGTGAGCCAAAACCTGCGGCGTATTGCTAATGACGATTCTGTTTGGAGAGGAATTTCTCAGGGATGTATCAACGTGCATTCTTCTCACAAAAAGATTGGGATATCCTGGAAGGAACTTTGTAGAGTTTCATGGAAAATTGGGTCCATGGCCGGTGTAGGGACAGATGTGTTATTAAGTTCAAAGCTAAGCTCATGCCGGCCATTCAACTTGGAAGAACACGGCAACTATACGTAGCACAGGGTGCTGATGTTGTTCTGTATCAAAACAGCAGGCGCTCTAAATCATCATCCTTTTGGCAACAGCTGATGACATTTAGTGGTCACCAAAGTGATGTATCTAAGTTTGTCGTTAGAGGCTGTCAGCTGGTAACCTGTAGTACAGACAAGTTAGTTTGTACTTGGAACCTCAAGACTGGACTCTGTGATGGCTTGTATAGTGGCCATACAGGAAGCGTGCGCAGTGTGGACTGCCTTGATGATGTGATAGTGTCAGGATCCAGGGATAAAACTGTAAAGGTCTGGTCTCAGCAAACTAAAGCTTGCATTCACACCATTTTTGTTCTGGATCCCATCTGGTCAGTTTGTCTCAACCCAAGTAACAGAATTGTGGCAAGTGGGAGCAGTGGTCATTCCAGGGGTGTTCCTGCACTACAGATATGGGATATTAACAGTGGAAGACTTGCCagaaacatggtgtcaggactCGAGAGACCTGGAGCAGGAGTTCTGGGTATGAAGTGGGAGACCCCATACACTCTGTTGTCCTGTGGCTATGATACTTTTGTCAAACTATGGGACACCAGAGTTGGCCACAGTGCCTCATCGTGTGTCCTTAGATGGGAAGACCCACATGATTCAGTTGTTTACTGTATTGACTCTGATGACAAATGGATGGTGGTCAGTGGAACCAACAGATATGGAGTGGTCAGAGTGTGGGACAAACGGTTCGGAAAGTGTATAAGGATGTTCTATGCCGGAAAGAACTCTTTTAGCCCCGTGTACTCATTGAAGTTCAACAGAACATCTCTGTTCATTGCTTTAGCCTATGGTGTCAGGACCTTGGATTTCACTGTGTAGGAAGCAATGGCAGACTGTAAATAAATCTCCTTTTATTCTCACTGTCGCATGCCTGTAAGTACAAGTCCTAAAATTCACAGCTGTAGCCCTCAGCTACTGACAGAATTGAGCTGTGGTGAATGTACCTTAATAGCAAGTCTCAGTTAGATCACTCCGGAAAGATGGACCCTTTACAAATGAGAGTCCCATGCTATAGTGTGGTTGAATGTCTTTGGTTCACAAATGTAGGAAAGCAGGTTTTATGGCTATTATGTGGAACACTCTTGAACAATATGTTTGTATGGTCTGTTCAACTTCTTATTTATTCCTGTAAAATGCTGAAATTTATATTTTAGTTTGTTTTATTACGGGATTATTAGAGGAAAATGGTTTAAATTATTCATGTTATTTGTGCAGACAACaattctgttttatttttatttctgtggatccgttttattaaaaataaaattgtgATCATGTGCCATGAAGGAAAGCCTCAAGGAATGACAACTTGAGTGTATGTATTGATTGTAGTGATGCAAGTTTTACTTTTCAGCTACTTTTTTACTTTGAAGCTGTATTGATATTGAGACCACTGGACCTCATAATATATTTGTTCCTGTACAGTGAAACATCTTTAGCAAGCTTCAACAACCCCCCcttcccaaaaaaaaaaaacaaaaaaaccacacagccataataattataaagtgTGTTTCTCATAGGAGGGAGCTTTCATCAGGTTATTGCTTGAAAGgaaattttaaagtttgttttaatgatgCATAAACTACAGCAGTATCAACCTTCACCTTATGCTTATAGTTTGGCTCTCTTTGGGTTGGGACGCAAACTGCAAACATAAGGCAAACCCTCAAAACTGCATTTGAGATGAGCATAAAAACACAATTAATTAATGTAACCATAGCTGCTATGCATGAGCCACTTGTAAAATTAAAGGCATTTAAAAATAATATATTACAGTACTGTAGGTATGGTAGTATATCTTTATTACCA

Protein

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR052301 all species →	Family	SCF Complex F-box/Wd Repeat-Containing Protein	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14381 all species →	DACTYLIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0019005 all species →	Cellular Component	SCF ubiquitin ligase complex	Interproscan
GO:0031146 all species →	Biological Process	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10262	FBXW4, SHFM3; F-box and WD-40 domain protein 4	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.