Gene detail

Detailed information of ENSJQFP00000003704.1 in Rhodactis osculifera

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species abbreviation ROSCU · all data for this species · gene families

Sequence

CDS

ENSJQFT00000003844

ATGGCGTCTGCGAGGTGGAAACATGCGGGTCAATTCATAACTTTGCAAGAGTCGTTACAAAAGTGTGCAGAAAGGCACTCTTGTTTCAGTCGTGTTGAGACAGTAGAACATATTTCCCTGCCCCCTCAGTACCTTGGTCGCTTAACGGAAGGAGTAAAAGAAGAGTTGAATAGTGGACTTATGAAATATTCCGATACACTGCAAGCAATTCCAGTTGCTTACGAAGGGATTAAAATTTTGCAAAGAAAGGGAGAAATCATGGAAGACTCGCCGTTTATCCACTTCGATGTTCAAGTTAAATTCATCGTGTTTAAGCCGACGGTTGATAGTAAACTTGTTGGTGTAGTGAACAAGATCGGTACGGACCACATTGGATGTCTGGTTCACAGATCTTTTAATGCATCCATCTCGAAATCGAACGTCAAAAACCACGATGTGTACgacaatttagaaataggaTCGAACTGCGAGTTCAGTGTAATAGGGATCGAAACAGTCAATGGCGTCGTATCAATAAATGGAAGAATAGACGAGGGGAGGCCAAAAGAAAGGAAACGAAAACACGCAAAATCAAAAGACACATCAACGAAAAGTCGGAGGAATGATTTTCTTGAAAGGACTAATGAAATACACGAAGAAAGACTAAATGGTGTAagtgaagagcaagacaaagtGAGCAAGAAATCCAACGAGAAGAGGAAAAAATCTTCTGGTTTATGTTATCTTCAGTTCAAAGAACCGAACGGACAGACCAAAGAGCAGACTCGTATTGTGTTTCCGTGGTACAATGTCAACAGATCTCTTGTGAAAGGTGTGAAGCTCGTCAAGTTAGATGACTCTTCGGATACCAGCGTCACGGTTGAACCTCGACAGGGTTTCTTGGGATTGTTTGGCTGGAACACAGTAGGCTTAGATGCCAAAGAGGTTGTGATGACATCAACAGAGTTTAACGCTATTGCTGTACACCAGTCCACCTCCTATCCAGCCATTTCTCTCCCACTGGGAACAAATTCTCTTCCTCCTGAGgtTCTTCCCCAACTCGAACAGTTTCAAAAGATTATCCTGTGGTTTGGAAACGATGTTATCTCACGACAGGCAGCGAATCAGTTCTCCAGAAAACTGAACTTAAAGAGGTGTTACCTTGTCCGGCCAACAGGCGACAATATCCCCTCAAATGCTTTGGATGCTTTGAATATGGGATGTGACCTGAATTCGCTCATATCTGAAGCACGGCCGATTAGCCATGAAAAAATTACAACATTTCACCAGCTGAGGGATGAAGTATTGGATCAGTTTGTAAATGCAGACCAAGTTGCAGGAGTGAAGTGGACACGCTTTCCCAAGATGAACAGCATTCTAAAAGGACTAAGACGCGGAGAGGTGACAGTGTTTACTGGACCCACTGGTGCGGGGAAGACTACGCTACTCAGTGAAATGTCGCTGGATCTCTGCATGCAAGGGGTCAACACTCTTTGGGGAAGTTTTGAGATTCACAATGTTCGTCTTGTCAAGATGATGTTGTCTCAGTATTCCGGACTGAACCTGGAGAAGAATGTTGAGCAGTTTCAGTACTGGGCAGACAAGTTTGAGGCGCTTCCCATGTACTTCATGTGTTTCCACGGAGCGCAGAACATCAGCACTGTAATCGAAACCATGAGCCATGCTGCGTACGTGTACGACATTGAGCACGTCATCGTGGACAATTTGCAGTTTATGACGTCATATTTCAGCCGAGGTGACGATCGATTTTCCGCCCAGAATCACGTCATTGCTGCCCTCAGGAATTTTGCAACCACAAAAAATGTCCATGTCACGTTGGTCATTCACCCCAGAAAGgaaaacgatGACGTGCAACTTCAAACAGCTTCAATTTTTGGTACAGCGAAAGCGAGTCAAGAAGCAGACAATGTCATCATTTTGCAGAACAAGAGCGGAACCCCTGAGAAGTACTTGCAGGTTAGAAACGAGACCGGAAACTCCTCCTCCTGTTTGCTGCCTCCAGTTACCAAGAACCGCTTTGATGGCGTACTGGGACGAGTTCCTTTGGAGTTTGTCAGAGAATCATTGTCAATGTCAGGCTTCGGCAAAACGTCACACCAAAGGCCCGCGATGACTCTTGACAGGAAAAGACCAGACAAGCTGAAGGCCACTCGCCTGGTAACCGGCGCAGAAGTTCTCAAGTTTTCCTCGCCGAAACTCCTCGGTGAATCCACCTCTGTTAATAAACTTAGTAACAGAAACTCCAAATGGGCAAAATTCTCTTCGATGAGAAACACTACTCGCCGAGAGGAGGCATTAAGCGAGGCTAAATTAAATAAAAGGCACGGTGACAGAAACAGCAAAGCGAGCGAGGCAGATGATTCGGGACCCAAGGTGGGAGGTGACTTCAACAACGTGATGTCAACGCGGGAGAAGAAAGAAATCGTTCAGAAAACAGTAAAGCAGAGATTGAGTGGGACTCGCTTGTTCACGAAAGCGATGAATGCGTCCAGAGGCGGCCATGGTACAACAAAACTTGGACAAGTGGCTAGTGAAGTTAAAAACTGA

Transcript

ENSJQFT00000003844

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03876 all species →	SHS2_Rpb7-N	SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397	Domain	Interproscan
PF17875 all species →	RPA43_OB	RPA43 OB domain in RNA Pol I	Domain	Interproscan
PF13481 all species →	AAA_25	AAA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005576 all species →	Domain	RNA polymerase Rpb7-like , N-terminal	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR007694 all species →	Domain	DNA helicase, DnaB-like, C-terminal	Interproscan
IPR041178 all species →	Domain	RPA43, OB domain	Interproscan
IPR027032 all species →	Family	Twinkle-like protein	Interproscan
IPR036898 all species →	Homologous_superfamily	RNA polymerase Rpb7-like, N-terminal domain superfamily	Interproscan
IPR034154 all species →	Domain	Archaeal primase DnaG/twinkle-like, TOPRIM domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12873 all species →	T7-LIKE MITOCHONDRIAL DNA HELICASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006351 all species →	Biological Process	DNA-templated transcription	Interproscan
GO:0003678 all species →	Molecular Function	DNA helicase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan
GO:0003697 all species →	Molecular Function	single-stranded DNA binding	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006264 all species →	Biological Process	mitochondrial DNA replication	Interproscan
GO:0043139 all species →	Molecular Function	5'-3' DNA helicase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSJQFP00000003704.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.