Gene detail

Detailed information of ENSJQFP00000005142.1 in Rhodactis osculifera

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species abbreviation ROSCU · all data for this species · gene families

Sequence

CDS

Transcript

ENSJQFT00000005333

TCTAATCTTTACTCTCTGTTGTCGAGATATTGAGCTATTTTTCTGCTGAAAATCTAAAGCAACTTTGTCAAGAGGATGCCTTTGCAAGCCAGGATAAGTCGACCTCACGAGAATCCTTTAGAGCCTATGCAAGTAGATATATCTCCAGAGAGTAACCACTCACCTCATGAGGATAACTTCACTGTGGAATCAGCAACTTTGGATCTTGATGTTTACGCGTCAAATTACACTGGCCTTACCAAGCTAAACAGGTTAATTTTTGTTGCTAAGCACTGCCCTTCACTGGAGATTGATGCGCTGAGGATAGCTTTGAGTTATGTAAAACAGACTTTCAATGTTCAGCTGTATCAGGAGATTATGACCGAGTTAACAGAAGCTTGCAGCCGTAGCGAGGCAGAAGCTCCTCCAATTGATATGACATGGATTGAGACCACAAGCAAAAAGGCAGCCCTTAagCTTGAGAAGCTAGACACAGATCTTAAAAACTACAAGAGCAACTCCATCAAGGAAAGCATCAGACGAGGCCATGATGACCTTGGCGatcattattttgatattggagaccTCAATAATGCATTAAAATGTTACTCAAGAGCAAGAGATTACTGCACCAGTGCTAAACATGTTGTGAACATGTGTGTGAATGTCATAAAGGTCAGTATTCACCTTGGTAACTGGTCACATGTTCTGAACTATGTCAACAAAGCAGAGAATACTTCAGAGCTGGCAGAGCAAAAAGATCGGCGACCAAACTTGGTGACACTTTCAAAGCTCAAGTGTGCAGCAGGTCTGGCAGAACTAgccaccagaaaatacaagTCAGCCGCCAGAAATTTCTTACAAGCCTCTTTTGATAACTGTGAGTGCCCTGAGATCATTTCACCAAACAATGTGGCTGTTTATGGTGGGCTGTGCGCTCTGGCCTCTTTTGACAGACAGGAACTGCAGAAAAAGGTTCTGTCAAGCAGTTCGTTTAAGCTGTTTCTGGAGTTGGAACCTCAGCTCCGAGATGTGCTGTACAAGTTCCACGAGTCTCAATATGCGGCTTGCCTGAAACTGCTGGATGAATTAAAGGATAACTTCATGTTAGACATGTACTTGGCGTCCCATGTCAACACGCTCTACACTCAGATCAGAAACCGCGCCCTTGTACAGTACTTCAGCCCGTACGTGTCAGCGGACATGGACAAGATGGCGCAGGCGTTTAACACAACAGTAACAAACCTGGAAGATGAGCTGTCACAGTTGATACTTGACGGGCAGATACAGGCCAGAATTGACTCCCATAACAAGGTTCTGTTTGCCCGTAACGTTGATCAGCGAAGCGTCacatttgaaaaagccttagaaatgggAAAAGACTACCACAAGAGAACAAAGGCCCTTATTCTTAGAGGAGCTATCCTTCGGAACCAAATTATTGTTAAAAGCCCTCCTCGCGAGTCCACTACTGGAGAGGTTTCTATGCCTGTTGCGCGATAAGGATCCCTTAAGCCCTGGAGATGGTCTTGAGCCAATCCATCATTTCCTTGATCAGGTTGAGAAACTCGAAAGAATTTCAGAGCGTAGTTTATTATTCTGATGATAGCAATTAAATTTACGGGCAAGTCTTCCTTTGGGTAAGAAAAGAAACGACTCACCCTGTGAACTATCGACTGTACAAACGTTCGCTTCTTGTATCTGAACGGACCAGCAAATAAATATGCAACTTGTTCGCTCCCATCCTTCACTAAACTAACCTTTCCACTGACTTGGAATGCGGATTATATAACCCGTTACACCAACGGTCTGACCTCCTTTCTCTTCTATTTTACACTAAAAAGTTCAACTTCCTTTCGGTTGAAAGTGTTTTCCTTTCAAGCCCAaacgttattatttatttacgttCATCGCTCAACTTAAGTGGGGAAAAATTGCGACGGGAAAAAAAGTGGAACGGAATTTATTGGCTTATATGATTTctatgaattttcttatttcacCTTTGCAGTGTGAATCAAACTTTTATTCCAGATTAGATCAGTAACTGTCTACCGCGAAGCTGGGTTTgaaattcaaacgataggggatttagtttcgaagaaaactgtgtgctgcatcggtgggaaagtgaaac

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01399 all species →	PCI	PCI domain	Domain	Interproscan
PF21151 all species →	CSN1_C	COP9 signalosome complex subunit 1, C-terminal helix	Domain	Interproscan
PF10602 all species →	RPN7	26S proteasome subunit RPN7	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000717 all species →	Domain	Proteasome component (PCI) domain	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR048624 all species →	Domain	COP9 signalosome complex subunit 1, C-terminal helix	Interproscan
IPR019585 all species →	Family	26S proteasome regulatory subunit Rpn7/COP9 signalosome complex subunit 1	Interproscan
IPR045135 all species →	Domain	26S proteasome regulatory subunit Rpn7, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14145 all species →	26S PROTESOME SUBUNIT 6	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0008180 all species →	Cellular Component	COP9 signalosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12175	GPS1, COPS1, CSN1; COP9 signalosome complex subunit 1	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.