Gene detail

Detailed information of ENSJQFP00000005252.1 in Rhodactis osculifera

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Rhodactis osculifera · all data for this species · gene families

Sequence

CDS

ENSJQFT00000005443

ATGTTCGTGCGTGGTACTTCTGTAAACATCAAGGCCAGCGCTTCGTCGCTCTGTAACAATCTTACAGTGATATCGTCGAAAGAGAAAGAGTCGTTTACTTACGGAGTCGTTCACAAGGCGTTTGTATGCGTGACGAATGTTTCCAAAGGGAGCATTGTGACGCAAAAGCAGGTCACTTGCAAAGGAGAAGGCTCCCACAGTAGTTCAGCGCTGTTACAGGTTAAATGGTGTGAACTTCCAGAAAGAACGTTGTTGGTAATAACCTCAGTAAAAGGTGTCCAGATGTTTGAACCAGATGGATCCAATATGGTTTTTTGGCAAGCACTTGGAGAATCGAATGATGGAGTTTATTGCCATTTTGCAAGAGGGGTTTGTGCTGTAGGAGCCAAGTACATATGTGTGGGCATTTCAGATGGAAAGGTCATGGTATTTGACATTCCTCCCCATGGCCCTGAGGTCAAATTACAACAGACTCTGACATCCCACAAAGTGGCCATTAGTGATCTTGCTGCACAAGGTGGACGTATGGTATCAGCTGATGAAGAAGGAAATATCATTCTTTGGCAGTCGGGCAGCCATTTCACACAAATCATTAGAATAGATGGAAAAGGGTTTCCTTGTTCATCTGTATGCCTTTACAAGGACTTGATAATAGGTGGTTTTGCCACCGGCCATATAAGAGCCTTCAGGGGTTCTACGGGTTCCCTTTGCATTGAGGCATGTGCTCACGCCCGCTGGATCAATGCCCTTGATGTTTCCACAGAATCTGCACTGAcgtctttttgtctttcttGTCAGATGGAAATGGTATACCAGCAATCCATTGCAGATGTGCAGTTATGTGGTGcaaagtttctggattcatcaGGAGATGCATTTGGTGACACCTGCAGTTTGACTTTGTTTCGCGGTAAACCGTCTCGTCTCATTTACCATTGGCTAATATTCAGCCAATTGACGCTGAGCAAACATGGTCGCGGTGCGTTCTCGTCAAGACCTCAGTTTCGCTTTGCACTTGAGTCAGAAGGGACCCTGAAAATTCCTTGTCGAAGCTTCGAGGGGGCTTCGCACGCTTCGAAAACGGCCGATTCGTGGAGGTGGAGAATGCCCAGTGTGCCTCTTCCAAGTCCAAGTTATTCGACGGGGCGCCATACTCCGTACTACACACATCCAGATGTGAGAATTTTTGAGTTAAATCGACGGTTACAGCATCGTATCGAGGATGCAGACAATGTCTGGTGGGACACATTTGCAACAGAGTTTTTTGAGGATGATGCCACCCTGACATTGAGCTTTTGCTTGGAGGATGGACCAAAAAGATACTCAATAGGGCGGAACCTTATTCCACGATACTTTCGCAGCATATTTGAAGGTGGAGTCAAGGAGTTATATTACCATGTTGTTCAACCTAAAGAATCTTATCACAATAACACAAGTACAGTCACATTAGACTGTGACAACACAACAATGGTCACGCATCATAACAAACCAGTTTTTACAAAGGTTTGTACTGAGGGCCGCCTCACATTAGAATTTGCTCTGGATGACCTGATGCGGATACGAAACTGGCACTTTAACATCCGGCATTACACAGAGATGATTCCTCGCAATTTGATTGGTGGGGTACAAGATCCGGGCATACTTGAACAGTTGTCAAAAAACATTACAAGACAGGGAATGACTAATGTGACGCTTAATTATCTTAGGCTTTGTGTAATTCTTGAGCCAATGCAGGAACTTATGTCAAGACACAAAACCTACAACATGAACCCAAGAGACTGCTTGAAGTCTACACTTTTTCAAAGATGGCAAAGAATGTATGCTCCACCCGGATCCCCTTTTCCAAAACTGCTGAGGGAAACCCTGACTGGGCAGCCTGCTACCGCAAAAGAAACTACACGTCAAAGAAACAGACGAAAACGCAAGACATCAACCAATCCTAATTCCTCAACTCCCAGCTCTGGGGTAAATAGTTCATCAAGTAAAAAGAAGTTGCCCAGTATGACACTAGCAACACAGGATGTGATGGTGGTTGGCGAACCATCGCTGATGGGTGGAGAATTTGGTGATGAAGATGAACGATTAATCACAAGGTTAGGTTGCGACGAAGGTGATGGTGGTTTAGCTGACTTTTCTTCGGTGAGTGTTGATCCTacctctttcattcatttattgaccTCTGACAAATTCAGTCTTTAA

Transcript

ENSJQFT00000005443

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01803 all species →	LIM_bind	LIM-domain binding protein	Family	Interproscan
PF21031 all species →	WDR54	WDR54	Repeat	Interproscan
PF17916 all species →	LID	LIM interaction domain (LID)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR041363 all species →	Domain	LIM interaction domain	Interproscan
IPR029005 all species →	Family	LIM-domain binding protein/SEUSS	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR049546 all species →	Repeat	WD repeat-containing protein 54-like beta-propeller	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10378 all species →	LIM DOMAIN-BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000122 all species →	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005667 all species →	Cellular Component	transcription regulator complex	Interproscan
GO:0007399 all species →	Biological Process	nervous system development	Interproscan
GO:0030274 all species →	Molecular Function	LIM domain binding	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSJQFP00000005252.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.