Gene detail

Detailed information of ENSJQFP00000005360.1 in Rhodactis osculifera

Genomic Location: chr11:8901054...8918829
NR annotation: no NCBI-NR hit recorded
Species Rhodactis osculifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSJQFT00000005551

TGATCAATCCCATATTGCAGTCCTGTCAAGGCCACATGGCATCAGTGGTTTACAGATCAAATATATGTTATCACCTTGGGCAAATATGTTGCAGGAGGACAAGATGGTGGGTACAGAGGTAACAGTCTCTTTGCCTACTATGGTTATATTTTGAGGACAAccttcttttaaagaaatttgTGTGCAAACAGTGGCCACTTTGTGGCAGAGTGCCCTTGGTTAAAAGCTGGAATTGGGGACTTTTGAGAAGAACAGTTAGTACAAAGTCAGCTCCAAGAAGATCCTCAGACATTTCATTCATTGGGGCTTTAGTGGGAACATTAACTGGACTTGGTCTTGCTGCTAACAAGCATAAGCTGTCCCTGGCAAAAGAACGAAGCGTTCCTAGTCAAGAAGTCGCAACAAGTGGAAAGCCTGTTTACAGTGCTGAAGAAGTAGCAGAGCACAATACTCGTGAAAAAAGGATTTGGGTAACGTACAAAGACAACGTGTATGACATAACTGACTTTATAGACAGCCACCCTGGTGGTTCAAAGAAGATTATTTTGGCAGCTGGAAAGCCATTGGAACCCTTTTGGGCTCTTTATGCAGTGCACAATACTCAGCACATACTGGACCTGTTGGAAGAATATCACATTGGTACATTGTCTGTGGATAAGGCGTCATCCCAGAGCACAGATATAAAGGACCCATATGTTAAAGACCCCGCCCGTCACACGGCCCTGAAAATCAACACCAAGAAACCATTTAATGCTGAGACCCCAATTCAGCTTCTGACGGAAAGCGTCATTACTCCTAACGAGATATTTTTCATTCGTAATCATTTGCCTGTTCCTGACATTGACTCCAACAAATACGAGCTGGAAATTACTGGAGAGGGGATAAACACTACGAAACTATCTCTAGAGGATCTAAAGACCAAGTTTCCCAAGCGCACCATAACAGCGACCATCCAGTGCGCTGGTAACAGGAGAAGTGAAATGAATCGCATCAAGGTGGTAAAAGGGCTGAACTGGGGAGCAGGCGCCATCAGCACTGCCACATGGACAGGAGCACCTCTCCGTGATATACTGAGGTATGCTGGACTCGATGAAGTGTCAGTGCGAAACACTGCAGTAGAACATGCGCAGTTTGAAGGGGCGGATCAGGACATCACAGGTTCCTCATACGGTGCTTCTGTGCCTATTAATACAGCACTGTCTGCTGATGGAGACGTGTTGGTAGCGTATGAGATGAATGGTGTGCCAATCCCACGAGACCATGGCTTTCCCGTTCGTGTTGTGGTGCCCGGTGTGGTAGGCGCGCGTAACGTCAAATGGCTGACGCGGATTATAGCGAGCAAGGAGGAGAGCCCCAGTCACTGGCAGCAGAATGACTACAAGGGTTTCTCACCATCTGTCGCCTGGGACACGGTCGACTTCAAATCGGCACCCGCTATTCAGGAGCTACCGGTTACCTCTGCCATCTGTGATCCCCCCGATGGAGCCACTATATCCGCAGACGAGGGCGAAATATCGGTACAAGGATATGCTTGGAGCGGAGGGGGGCGGGAGATTGTTCGTGTGGACGTGTCTCTTGATGGTGGAAACAACTGGCATTTGGCCGAACTGGAAGGACCGCAGCAGGACCTAGCGCATTCATGGGGCTGGAAACTATGGCGCGCCACTCTGACCCTGCCAGAGGGGCTGAACTCGCTTGAGATCTGTGCTAAGGCGATTGATTCCTCGTACAACTCGCAGCCCGAGAACGTGGCTCCGATCTGGAACCTTCGCGGCGTGCTCTCCCATGCGTGGCACCGGGTGAACGTGACTGTGACACGTGACTGACACGTGACTAGCGAGCTTTGAAGAGGAAAACGTCAGACAAGGAAGAAAAGCAAATATCTTGCGATCCTTGCTTCCACGGAGGCAATGTAAACCACAGTGAGATAggtaaatgacaaaaaaaagtaggttcgcaatgcgtacaAACAAATCCGATCTTGCCATAATGTGActatacactttgtgtaagcaacacaGCAAGCCAGCACTAGACCTAAATCACGCGCTATTCTGCTGTTGTACTCGGTTCCATTAAATCCTAGAGATAATGTGGGAACAATGCACCTAAACTCTCCCCAACACTAAGACATCACCTGCACGATAAGGGACACTCATTAATCCAATCAACCAGTTCACTGTAATGAGCAAAACCTTGCTGttttagttttaaccctttaaggcctaacagcgatctgagtcaaacttctcattgcaatatcaagggtttatcagttagtgaggtcataagaattgagaacaagatcactccagtcaaattctattggtacttctgtaagaaatgtatcgaaacacaaaaggagaatttgtaatttgataccagggcttaaagtgttaaaggCAGGCCGCGGTGTCTGTACGTGAAGTCGTTCTTTCCAG

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003450 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03404 all species →	Mo-co_dimer	Mo-co oxidoreductase dimerisation domain	Domain	Interproscan
PF00173 all species →	Cyt-b5	Cytochrome b5-like Heme/Steroid binding domain	Domain	Interproscan
PF00174 all species →	Oxidored_molyb	Oxidoreductase molybdopterin binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036400 all species →	Homologous_superfamily	Cytochrome b5-like heme/steroid binding domain superfamily	Interproscan
IPR001199 all species →	Domain	Cytochrome b5-like heme/steroid binding domain	Interproscan
IPR036374 all species →	Homologous_superfamily	Oxidoreductase, molybdopterin-binding domain superfamily	Interproscan
IPR018506 all species →	Binding_site	Cytochrome b5, heme-binding site	Interproscan
IPR005066 all species →	Domain	Moybdenum cofactor oxidoreductase, dimerisation	Interproscan
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR022407 all species →	Binding_site	Oxidoreductase, molybdopterin binding site	Interproscan
IPR008335 all species →	Family	Eukaryotic molybdopterin oxidoreductase	Interproscan
IPR000572 all species →	Domain	Oxidoreductase, molybdopterin-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19372 all species →	SULFITE REDUCTASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0020037 all species →	Molecular Function	heme binding	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0030151 all species →	Molecular Function	molybdenum ion binding	Interproscan
GO:0043546 all species →	Molecular Function	molybdopterin cofactor binding	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006790 all species →	Biological Process	sulfur compound metabolic process	Interproscan
GO:0008482 all species →	Molecular Function	sulfite oxidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00387	SUOX; sulfite oxidase	EC:1.8.3.1	Sulfur metabolism	ko00920	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Rhodactis osculifera tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Rhodactis osculifera, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →