Gene detail

Detailed information of ENSJQFP00000007859.1 in Rhodactis osculifera

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species abbreviation ROSCU · all data for this species · gene families

Sequence

CDS

Transcript

ENSJQFT00000008206

aacaacaacagctagCGAAACACGTCACATGCCCTCAAACAATGTGCTCAACGGCGTATGTCAAATAAGTCCCTTGAGGCACATCTTAGAGAACATGGCGTCCGACATtatggggtcgtcgttttttcGCCATTTGCAATCTAAAGATCTTCACCAATATCTGAGAAGTTTGCCACCTGGTATTTTAGATAGGTTATATAATCATCCAGCAATCTGCATAGCAGTTTTTAGGGAGTTACCAGAACTGGCCAAGCAGTTTGTTATGAGAACCCTGTTTGCTGAACAGCAAGTACCTGAAACTCTAGTTGCAGCCTGGATAAAACCTCAACATCATAAGCACTACATTGGTGCCCTTAAAGGACTTAAGAGTCTCAGAATATGGAGAGAGTCAAGTGGTGGGATACCAAATAAACTTGAGATGAATACTGTGTTCCGTAGTAATCTCAAGATTGCCCTTTGTGGAGGTGGAAACCCTTGGATAGGGTCTGTGGATCAGCCAGAACATGACAAGCATGCACGGGACATCCCATTTTTAGATAAGTACAGCTTGGAGCGGTGGGAGGCTGTCTTGCATTTCATGACTGGTTATCGTTCAACAGATGACAGTGCTGTAGTCAGCTCAGTGTTGGTCCTCTCAGGTCTGATGAAATGTGAGACGCCTGGCAACACACCGGTGATCAGTCCAGCagggtttcagtttcttttgttgGACACAGTGTCACAAGTCTGGTACTTCATGTTACAGTACTTGGAAACTGTTGAGGCACGAGGCATGGATCTGGTAGAATGTTTGACTTTCCTTTTCCAAATCAGCTTTGCAACTGTTGGAAAGGATTACTCTACTGAAGGAATAAGTGAGTCTCAGCTAAAGTTTCTTCAGCATCTTAGAGAGTTTGgacttgtttttcaaagaaagCGTAAATCTAGGAGATATTATCCCACGAGACTGGCAATCAACTTAGCATCGACTGGAATGGCTGGGAACCCATCTGCCAGTAGTAGTGATCAGAAGGGCTTCATTGTAGTGGAGACAAATTACCGACTTTATGCATACACAGagtcATCATTCCAAGTTGCTCTGATTGGATTGTTTGCCCAGATTCTCTGTAGGTTTCCAAACTTTTGTGTAGCAGTTCTAACAAGAGACAGTGTTCAAGAGGCGTTATCAAGTGGAATTTCAGCTGAACAGATTCTCCATTTCCTGCGAACACGGGCCCACTCAGAGATGTTTAGACAGACTCCCGTAATACCACCTACAATAAGCGACCAAATCCGCCTGTGGGAACTGGAGAGAAGTAGAATGAAGTTCACCGAAGGTGTGATGTACAATCAATTTTTATCGCAAGCGGACTTTGAAACCCTTAGGAAGTATGCAGAGGATCTTGGTGTCCTTATGTGGGCAAACTCGTCGAAGAGGATCATTGTCGTTAGCCGCTCGGGACATGACGAAGTCAAACGATTTTGGAAAAGACAGAAACAGAACACGTGACTAGCATGTCGGTGAATTCACACCTGGATTGCGGCTGAACAGATGAATGTGGAATATCAGCGGTACGCATTGAAGGGTATATGGAGAGCAAACGAAACTTAAAGATTTGAGGATACAACATTTCTTCATCTGCGTCGATGCATTTCCCGCTCCATAAGGAACATGCGACAACCCTAACTTTATTATGACGAGCACCCTGGTGCTTTTGTCTTCTAACAGACTTGGGATCATTGAATATTATCGTATAATTGAGCGCCACAAGAAAGTCGACATGAAGGCCTAAATTTTGACCTGACCTGGCCAATTCTGAAATGAAGAATGCTATCCCAGAGCCTCGCATGACAGTACCATGCACTGGTTCCCAACCAGTCTACAAGGAAAAGtgtatttggacttggcactcaacTTAATTCAGATACATGAATTCACATGCTGCACTTAATAGGGAATTGTCCCGATTTTAGGATTGCGTGCGTGTTCATTCCTTTAAAACACGTTAAATCAAATTAACAGACGGCGACGCCTCGGAAGTTCATTTTTTGCAACTAATTAAAAGATTATCTGTCTAAGATTGAGAGCTGAATTAAAACAAGTAAACGGCTTTAAAACTAATacgggaaaaaaaattaagcgcACACATTAAACACAAGCAGAATTCTACCAAAAAAGAAACTTGGTTTTCATCTCATATTAGTGGTAAGGTGTGGGTGTTCATATTGGCTCCGACTAAATATAATTTTCTGTATCTCATTCGGCCTTTCGAAAGCTGTTTGCCTCTGCAAGTTAGTTGCTTGGTTTGTAGGATACACCTGTAATCTGTAGTCTAAAAGTAAGTGAAATAAAGCTGTTTCGATAACTGTTA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18307 all species →	Tfb2_C	Transcription factor Tfb2 (p52) C-terminal domain	Domain	Interproscan
PF03849 all species →	Tfb2	Transcription factor Tfb2	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040662 all species →	Domain	Transcription factor Tfb2, C-terminal domain	Interproscan
IPR004598 all species →	Family	Transcription factor TFIIH subunit p52/Tfb2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13152 all species →	TFIIH, POLYPEPTIDE 4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000439 all species →	Cellular Component	transcription factor TFIIH core complex	Interproscan
GO:0001671 all species →	Molecular Function	ATPase activator activity	Interproscan
GO:0003690 all species →	Molecular Function	double-stranded DNA binding	Interproscan
GO:0005675 all species →	Cellular Component	transcription factor TFIIH holo complex	Interproscan
GO:0006289 all species →	Biological Process	nucleotide-excision repair	Interproscan
GO:0070816 all species →	Biological Process	obsolete phosphorylation of RNA polymerase II C-terminal domain	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03144	TFIIH4, GTF2H4, TFB2; transcription initiation factor TFIIH subunit 4	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.