Genomic Location: chr14:4996515...5009554
NR annotation: no NCBI-NR hit recorded
Species Rhodactis osculifera · all data for this species · gene families
| CDS |
| ENSJQFT00000008247 |
| Transcript |
| ENSJQFT00000008247 |
| Protein |
| ENSJQFP00000007900.1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000505 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF07714 all species → | PK_Tyr_Ser-Thr | Protein tyrosine and serine/threonine kinase | Domain | Interproscan |
| PF08515 all species → | TGF_beta_GS | Transforming growth factor beta type I GS-motif | Family | Interproscan |
| PF01064 all species → | Activin_recp | Activin types I and II receptor domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR003605 all species → | Domain | GS domain | Interproscan |
| IPR001245 all species → | Domain | Serine-threonine/tyrosine-protein kinase, catalytic domain | Interproscan |
| IPR017441 all species → | Binding_site | Protein kinase, ATP binding site | Interproscan |
| IPR000333 all species → | Family | Ser/Thr protein kinase, TGFB receptor | Interproscan |
| IPR045860 all species → | Homologous_superfamily | Snake toxin-like superfamily | Interproscan |
| IPR008271 all species → | Active_site | Serine/threonine-protein kinase, active site | Interproscan |
| IPR000719 all species → | Domain | Protein kinase domain | Interproscan |
| IPR000472 all species → | Domain | Activin types I and II receptor domain | Interproscan |
| IPR011009 all species → | Homologous_superfamily | Protein kinase-like domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR23255 all species → | TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I AND II | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004675 all species → | Molecular Function | transmembrane receptor protein serine/threonine kinase activity | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0006468 all species → | Biological Process | protein phosphorylation | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0004672 all species → | Molecular Function | protein kinase activity | Interproscan |
| GO:0004674 all species → | Molecular Function | protein serine/threonine kinase activity | Interproscan |
| GO:0005886 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0007178 all species → | Biological Process | cell surface receptor protein serine/threonine kinase signaling pathway | Interproscan |
| GO:0007399 all species → | Biological Process | nervous system development | Interproscan |
| GO:0016361 all species → | Molecular Function | activin receptor activity, type I | Interproscan |
| GO:0032924 all species → | Biological Process | activin receptor signaling pathway | Interproscan |
| GO:0043235 all species → | Cellular Component | receptor complex | Interproscan |
| GO:0048179 all species → | Cellular Component | activin receptor complex | Interproscan |
| GO:0048185 all species → | Molecular Function | activin binding | Interproscan |
| GO:0071363 all species → | Biological Process | cellular response to growth factor stimulus | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K04674 | TGFBR1, ALK5; TGF-beta receptor type-1 | EC:2.7.11.30 | Protein kinases | ko01001 | deepkoala |
Genes whose expression across the transcriptome samples of Rhodactis osculifera tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Rhodactis osculifera, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
