Gene detail

Detailed information of ENSJQFP00000008024.1 in Rhodactis osculifera

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species abbreviation ROSCU · all data for this species · gene families

Sequence

CDS

ENSJQFT00000008372

aTGAAGATGTTATGTAAACGCCACAATCTTCCCATCAGCCATTCTCTTTTGGAGCAGCTGCTTGCCAGGTTTGACACTGAAAAGGATGGATGGGTCAATTGGAGAGAATTCTCAAAATTGTTGGACAAAGCTTCAATTGTTATTTCTCTTGGAAATTCATTGCGAGTGGACAATAAGACTTCTATTGAAGGGAGTAGTAAAAATGGTCTGACTAGAAAACACAACAGCTTCTCAACAGTCACTGCAGAGACTCAAACAAGCTCAGAACCAGAACCGGTGCAGTTATCAATACGAGGCCGCAAGGTTTACCTCTACCCCCCTGACGAATACTTGGATTTTGATGTATCACCCGACCCCCCTGAGGAAAGGCCGCAATTGGAATGGGTATATGGTTATCGTGGCAGGGATTGTCGCAATAATTTGATGGTGCTGAGCTCTGGGGAGATAGTATATTTCACCGCAGCGGTGGTTGTGATCTATGACGTGAAGACACACAGCCAACGGCATTACACAGAACACACCGACGACATAAAGAGTTTGGCTGTTCATCCTGATGGCGTAACAGTCGCTTCCGGACAAGTCAAAGGCCGTGGCACAGAACGCCAGCCGCATATCAGAGTGTGGAAGGCCGACACTGTTGAGACCATCTGTAGCCTTGGCGTGGACTACTTCGAAGATGCTGTTTACGCACTGGCGTTTTCCAGCAAGagaggtcaagatgtgtatctTGTATCTGTGGAAGACAATGAATATCACACGATAACAGTGTGGGACTGGGTACGACAGAGAAAGCTCGCCTCGGCAAGGGGCAGCATGGATCAAGTGCTGGCGGTGAGTTTCTCTCCATTTGAAAGCCATCACTTTGTTAGCTGTGGCAAGCAGCACGTTTCATTTTGGGAGCTGGAAGGTGGTCGACTGAAGCTTTCCAGGGGAAGATTTGAAAAGCAACACAGGCCAAAGTACGTATCTTGTGTGACTTTTGCAACGAATGGCGACGTCATCTCGGGTGATACCGATGGGAATATCAGTGTCTGGCCGGAAGATTCCAATCAGATTGCGGAGGACTTGGGAGTGCGAAATGCTCATTTTGGTCCAGTTTATGCTCTACTCTTTCTACCCAACGATGTGCTGTTGTCTGGGGGTGGCGGAGAGTCAACCGTGAGGGCGTGGAACAGAAAACCCAAATTAGTACCCACTAATGTCGAGTTAAGGATGCCCCGTGACATAAGTGGAGTGCGTACTCTAGCCGTGTGCGATTCCGACCAGCTGTATATCGGTACAGTAAATAACAACATCTGGTGTGCATCACTTGCTGTTGGTTCAAAGACGCCTCTTATGGGAGCTGGCACCACGCTCAAGAGAATTGCCGAGGGCCACTGTCAAGATTTACACGGGCTGGCAACTCATCCCAGTTCTCCTCTGTTTGTAACAGCTGGGAGTGAAAAGATAGTGCAGTTGTGGGATGCCGTTGATCACTGCGTCGTATGGACTAATACCAAACTGTCCTCACCGGCTCAGTCGGCAGCCTTCCATCCCGATGGCACGTGTATAGCTGTCGGATTCAAGAACGGAGGGTGGGTGCTACTCAATGCTTCGTCTGGAGAcatcattgttctgaggaagttCGAACCTTCTGAGAAAATATCAGAAATACAATTTTCGCCAGATGGTTCCCATGTTGCTCTGGCCTCACACGACAGCTGCATCCATGTTTATGAGCTGCAGAACGGAGAGAAGTCGGTTTCATTGAAGACTCGGTGCAAGGGTCACAGTAGTTCCGTTACTCATGTAGACTGGTCCAAGAACGGTGAAAGACTTCAGACGACATCCAGAGATTATGAGTTACTCTTCTGGGACCCCCACCAGGGAGAACAGATCTTCAATGCAGAGAGCATGCGTAACACAGACTGGGCCACACACAATTGTGTGCTGGGTTATACAGTCCTAGGTGTATGGCCCGAAGGCGCCGATGGCACTGACGTGAATACCGCTGACCGCTCCAAAGGAAAACACCTACTGGCCAGTGGCGATGACTTTGGTTGCGTGAATCTGTATAAATATCCTTGTATTAGCGAAAAAGCCGAGCCAAAGATTGCTAAGGGTCACGGTGCGCATGTCATGAACGTCCGCTTTCTATATGACGACTCCCGGCTCATCTCCGTGGGCGGTCGAGACGCAAGTATAATGCAGTGGAAAGTCGCCTAG

Transcript

ENSJQFT00000008372

ATGCCGAGATTTGTGACAAAGATAGTGGGAGGAAAGCTAGTCACTGTTCCAGTGTTTAGCCACCAATTACCGATGTCACAGCAGAGTGGTATCAGTGGTGGAACTTACCCTTGGGGAAGACGTGATCCTGTTCCAACTCACAAGATCGGCAGTCGGACATATCCTGTTCTTCCACCCATAAGCATTGAAAAGAAGTTATCAGaTGAAGATGTTATGTAAACGCCACAATCTTCCCATCAGCCATTCTCTTTTGGAGCAGCTGCTTGCCAGGTTTGACACTGAAAAGGATGGATGGGTCAATTGGAGAGAATTCTCAAAATTGTTGGACAAAGCTTCAATTGTTATTTCTCTTGGAAATTCATTGCGAGTGGACAATAAGACTTCTATTGAAGGGAGTAGTAAAAATGGTCTGACTAGAAAACACAACAGCTTCTCAACAGTCACTGCAGAGACTCAAACAAGCTCAGAACCAGAACCGGTGCAGTTATCAATACGAGGCCGCAAGGTTTACCTCTACCCCCCTGACGAATACTTGGATTTTGATGTATCACCCGACCCCCCTGAGGAAAGGCCGCAATTGGAATGGGTATATGGTTATCGTGGCAGGGATTGTCGCAATAATTTGATGGTGCTGAGCTCTGGGGAGATAGTATATTTCACCGCAGCGGTGGTTGTGATCTATGACGTGAAGACACACAGCCAACGGCATTACACAGAACACACCGACGACATAAAGAGTTTGGCTGTTCATCCTGATGGCGTAACAGTCGCTTCCGGACAAGTCAAAGGCCGTGGCACAGAACGCCAGCCGCATATCAGAGTGTGGAAGGCCGACACTGTTGAGACCATCTGTAGCCTTGGCGTGGACTACTTCGAAGATGCTGTTTACGCACTGGCGTTTTCCAGCAAGagaggtcaagatgtgtatctTGTATCTGTGGAAGACAATGAATATCACACGATAACAGTGTGGGACTGGGTACGACAGAGAAAGCTCGCCTCGGCAAGGGGCAGCATGGATCAAGTGCTGGCGGTGAGTTTCTCTCCATTTGAAAGCCATCACTTTGTTAGCTGTGGCAAGCAGCACGTTTCATTTTGGGAGCTGGAAGGTGGTCGACTGAAGCTTTCCAGGGGAAGATTTGAAAAGCAACACAGGCCAAAGTACGTATCTTGTGTGACTTTTGCAACGAATGGCGACGTCATCTCGGGTGATACCGATGGGAATATCAGTGTCTGGCCGGAAGATTCCAATCAGATTGCGGAGGACTTGGGAGTGCGAAATGCTCATTTTGGTCCAGTTTATGCTCTACTCTTTCTACCCAACGATGTGCTGTTGTCTGGGGGTGGCGGAGAGTCAACCGTGAGGGCGTGGAACAGAAAACCCAAATTAGTACCCACTAATGTCGAGTTAAGGATGCCCCGTGACATAAGTGGAGTGCGTACTCTAGCCGTGTGCGATTCCGACCAGCTGTATATCGGTACAGTAAATAACAACATCTGGTGTGCATCACTTGCTGTTGGTTCAAAGACGCCTCTTATGGGAGCTGGCACCACGCTCAAGAGAATTGCCGAGGGCCACTGTCAAGATTTACACGGGCTGGCAACTCATCCCAGTTCTCCTCTGTTTGTAACAGCTGGGAGTGAAAAGATAGTGCAGTTGTGGGATGCCGTTGATCACTGCGTCGTATGGACTAATACCAAACTGTCCTCACCGGCTCAGTCGGCAGCCTTCCATCCCGATGGCACGTGTATAGCTGTCGGATTCAAGAACGGAGGGTGGGTGCTACTCAATGCTTCGTCTGGAGAcatcattgttctgaggaagttCGAACCTTCTGAGAAAATATCAGAAATACAATTTTCGCCAGATGGTTCCCATGTTGCTCTGGCCTCACACGACAGCTGCATCCATGTTTATGAGCTGCAGAACGGAGAGAAGTCGGTTTCATTGAAGACTCGGTGCAAGGGTCACAGTAGTTCCGTTACTCATGTAGACTGGTCCAAGAACGGTGAAAGACTTCAGACGACATCCAGAGATTATGAGTTACTCTTCTGGGACCCCCACCAGGGAGAACAGATCTTCAATGCAGAGAGCATGCGTAACACAGACTGGGCCACACACAATTGTGTGCTGGGTTATACAGTCCTAGGTGTATGGCCCGAAGGCGCCGATGGCACTGACGTGAATACCGCTGACCGCTCCAAAGGAAAACACCTACTGGCCAGTGGCGATGACTTTGGTTGCGTGAATCTGTATAAATATCCTTGTATTAGCGAAAAAGCCGAGCCAAAGATTGCTAAGGGTCACGGTGCGCATGTCATGAACGTCCGCTTTCTATATGACGACTCCCGGCTCATCTCCGTGGGCGGTCGAGACGCAAGTATAATGCAGTGGAAAGTCGCCTAGGGTTTGTAGTCTTTGGAGATGCGGGAACTCGAGACCATCACACTGCCTGGTTTTATTCACCCGACATCCCAtcaacattggtatcaatggcATTAACACAGTTTAATTTGACTTGAAAACGTACGTAATGCAACATTGTAAATAAAATCAAGTCGTACATGGGTAACCCTTTCCAGTTAGTTATTATTGCATTGGGAGGACGCTTGTCTGAATTTTGAACTAGCTCGAGACTCCTAGTATTATAATTTAAAAACATCTCGACTAAGTGTCTCATCTTTTTCGAACAAGGCTTACGCTGACTCAAAGTCAACTATCTAACGCAATCATTTCCAGTCAATCAGACCATAGCCACAACATGAGTTACCCGAGAACATACTTATAACACACGTGGCTATAACAAATCGCGAGCAAATAAAAACGTTCGACAACAAAGGCGTTTAACTATCTCGCCCCTATTATTTTGCACGGCCACAAACACCGAAAGGAGGAACGCCTGTGTAACTGTGTATCCCAAGGTATATTCACTTCAGCTTGACACATTGTGCTGGTGTAAATACTCTTCACTATTACTTGGTAGGTCGACAAGTTCGCTTCTTTTACCCATACTTCTCATTATAATCGATTGCATGGTTACCAAGCAGACAACGACAGGGCATCTTGACTAAATAAAGTTGTGGAGATGTATTTTTCCAAGCCTGGATTGATCACCTAAAGTTTGCAGCACTCACTTTCTTCAATTTATTGCAAGAGTTGTGACAGTTTGGATTAGATTTGGTGGGTGTACGTAGTCAATTAGccccttacgctccaatagtgatcagtgtcaaatttctccttgcaatgtcATCGCCCTCTCATTCAGAGAACTCACGAG

Protein

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21029 all species →	RMC1_N	Regulator of MON1-CCZ1 complex, N-terminal	Repeat	Interproscan
PF20742 all species →	DUF5580_M	Family of unknown function (DUF5580) middle domain	Domain	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF03451 all species →	HELP	HELP motif	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR050630 all species →	Family	WD repeat Echinoderm Microtubule-associated Protein-like	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR049040 all species →	Domain	Regulator of MON1-CCZ1 complex, N-terminal	Interproscan
IPR049246 all species →	Domain	DUF5580, middle domain	Interproscan
IPR005108 all species →	Conserved_site	HELP motif	Interproscan
IPR011047 all species →	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13720 all species →	WD-40 REPEAT PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000226 all species →	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0072686 all species →	Cellular Component	mitotic spindle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18595	EML1_2; echinoderm microtubule-associated protein-like 1/2	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.