Gene detail

Detailed information of ENSJQFP00000009126.1 in Rhodactis osculifera

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species abbreviation ROSCU · all data for this species · gene families

Sequence

CDS

ENSJQFT00000009488

ATGATGATGGAGAATAATTCAACTTTCGACCTGGGATTTTTCGCCGGTACTTCTTCGAAGTCCTCTTCTCAAATCAATAAGCCACGGATGAGACACATTTCGGACCGCCACCCCAAACAAATCTTGGACACATTGGAAGCCCTAAGACAATGCCAACAACTATGCGATGTCATTGTTAAGGTGGGTAGTAAAACTCTTTATGCCCACCGTGTTATTTTGGCCGCTTGCAGTCCGTATTTTCAGGCCATGTTTACACGAGAGATGGCAGAAAGTCGCCAAATGGAAGTGGTTATCCAAGATGTCGATGAAACTGCTATGGAATTGCTAATCAATTTCGCTTACACAGCGTCTATAATTGTCGAGGAGAGTAACGTCCAAGCCCTTCTTCCTGCTGCCTGTTTACTTCAAATTGCAGAAATCCAAGAAATATGCTGTGAGTTCTTAAAACGACAACTCGACCCTTCGAACTGTCTTGGTATTAGGGCTTTCGCAGACACTCATTCCTGTCGAGAACTTTTGCGTATAGCTGACATATTTACGCAGCACAATTTCCAAGAAGTAATGGAAAGCGAAGAATTTTTACTTTTGCCAGTGACTCAGCTTTTAGACATTCTTTCAAGCGACGAACTCAATATTCGTTCGGAGGAACAAGTCTTCACTGCAGTGATGAACTGGGTGAAATATAGCCTGTCGGAGCGACGATGTCATCTGTCTCAAGTTCTTCAACACGTGCGCCTCCCTTTGGTAGGGCCTAAGTTTCTGGTTGGTGTTGTTGGTACGGATCTTCTGGTAAAGAGCGACGAGTCTTGCCGGGACTTGGTCGATGAAGCAAAGAATTATCTTTTACTTCCGGAGCAGCGGTTGCTCATGCAAGGACCCCGCACGCGACCACGAAAGCCTACCAAATGCACTGAAGTATTGTTTGCGGTAGGTGGGTGGTGTAGTGGTGATGCTATAAGTAGTGTTGAACGGTATGAGCCACAGACTAGTGATTGGAAAATGGTTGCGACAATGAGTAAGCGGCGCTGTGGTGTAGGTGTTGCAGTTCTAGACAATTTACTCTATGCTGTTGGAGGACATGATGGGAGTAGTTATCTCAACAGTGTGGAAAGGTATGACCCTAAAACAAATCAGTGGAGCAGTGAAGTTGCGCCAACATGCACCTGCCGAACCAGTGTTGGGGTAGCTGTGCTTGATGGGTTTATGTATGCCGTTGGTGGCCAAGATGGAGTTTCATGTCTTTATATTGTTGAAAAGTACGATCCTCATGAGAACAGATGGTCCAGGGTAGCTTCCATGAGCACTCGACGACTTGGGGTGGGTGTGGCTGTTCTTGAAGGATGCCTCTATGCTATTGGTGGTTCAGATGGCACCTCACCTCTGAACACAGTCGAGAGGTATGATCCAAAAACTAATCGATGGAGTTCAGTGTCTCCCATGGGAACACGAAGAAAACATCTTGGGGCATCCTTGTTTCAGGATAAACTTTACGTTGTTGGTGGTCGAGATGATGCAACAGAACTGAGCAGTGCAGAGTGTTATGATCCAAAAGCAAACCTGTGGTCTCCAGTTGTGGCAATGAACTCACGGCGCAGTGGAGTTGGACTCGCTGTTGTAAATGGACAGCTTCTGGCTGTAGGTGGATTTGATGGAACCACGTATCTTAAGACAATTGAAGTATTTGACCCAGCCTCCAACCAGTGGAAGCTGTATGGTGGAATGAACTATCGCCGGCTTGGGGGTGGGGTAGGAGTTGCTCTAGTAATTCCCGAGAAGTTTCAACATATTTTGCGTGTTCTGAACACCAACATCGATGGGAAACAAAAAGTTATGTTTGCTCTCACGTCCATCAAGGGTGTGGGGCGAAGGTATGCCAACATTGTTTGCAAGAAAGCTGATGTTGATATGAACAAGCGTGCTGGAGAACTGACTGATGACGAGGTGGAGCGTGTGATAACAATCATGCAGAACCCTCGTCAGTACAAGATTCCAGACTGGTTCCTCAACAGGCAAAAGGATATCAGAGATGGCAAGTATTCACAGATTCTTGCAAACAACTTAGAGAGCAAGCTTCGTGAAGATCTTGAAAGGTTAAAGAAGATTCGTGCTCACCGTGGTCTCCGCCACTACTGGGGtCTTCGTGTACGTGGTCAGCACACCAAGACAACAGGTCGCAAAGGCCGAACTGTTGGTGTTGCAAAGAAGAAGAGCTAG

Transcript

ENSJQFT00000009488

Protein

Gene family

Family type	Membership / link
Ubiquitin family	E3\|E3 adaptor Cullin RING\|BTB · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00416 all species →	Ribosomal_S13	Ribosomal protein S13/S18	Family	Interproscan
PF01344 all species →	Kelch_1	Kelch motif	Repeat	Interproscan
PF00651 all species →	BTB	BTB/POZ domain	Domain	Interproscan
PF07707 all species →	BACK	BTB And C-terminal Kelch	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001892 all species →	Family	Small ribosomal subunit protein uS13	Interproscan
IPR010979 all species →	Homologous_superfamily	Small ribosomal subunit protein uS13-like, H2TH	Interproscan
IPR000210 all species →	Domain	BTB/POZ domain	Interproscan
IPR006652 all species →	Repeat	Kelch repeat type 1	Interproscan
IPR015915 all species →	Homologous_superfamily	Kelch-type beta propeller	Interproscan
IPR011333 all species →	Homologous_superfamily	SKP1/BTB/POZ domain superfamily	Interproscan
IPR011705 all species →	Domain	BTB/Kelch-associated	Interproscan
IPR018269 all species →	Conserved_site	Small ribosomal subunit protein uS13, conserved site	Interproscan
IPR027437 all species →	Homologous_superfamily	Small ribosomal subunit protein uS13, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24412 all species →	KELCH PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10457	KLHL20, KLEIP; kelch-like protein 20	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.