Gene detail

Detailed information of ENSJQFP00000010361.1 in Rhodactis osculifera

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Rhodactis osculifera · all data for this species · gene families

Sequence

CDS

ENSJQFT00000010813

ATGGCGGATACTTTCTttgggtttgatccacagatccCTGCATTCGAGGACGAAGAGTTGTCAGAGTTGGATCCAACATTGACGAATTTGGGTGCAGGGGATGAGTACGACGAGTTAAACGAAGATACTTTCGGTGCAGGGGCGTTAGAAGATGACTGGGAGAATTCTCACCGAAAATTAGTAGATATTGAGGTTGGAAGTACGCAATCAGCAGACTTTGACAAGTGGCTCAGGAGAAAGGGCCTTCAACATGGCGTGGAAAATGAGACAGCACTCAAAGGAACTGAAAGACCTGCCAATGATGATGAcgaatttaacgatgatttagATCGAGAAGAGGAAATTTTGGAGCAGAACTTGGCAAAACTTgtggatgatgatgaaaatgagcCACGACCCAGCCCAAGCTCTTCATCCAAGTTTAAGGACATCAAACCACAAGCAAGACTTGGCCCAGTATGGGATGGCTCTTCACCATTATCTAGTCCAGCTTCATCGACTTCATTGCATGAACTGATTTCACCATCTGCTAGTATATGGGGATCACCTTCAAAAGTGGACAAAGAGAATGCTAACAAAGGGCCAGTGAATACTCAATCACCAGCTTTGGCTGAACTACTAAAGGCAGAGACTGAAAGGTTAAGGTTGCTGAGAAGACCTTTCTCTCCAGCATTTGAGGATGATTCTATTGTTCAAGCAATGCCACGCCAAGGCCTCATTCCCCCAAGCCAGTTTATGAAGAAACCTCAGCCGGTTAATGCTATCAAACTAGAGGATTTAGAGAAACAACTTACCGGTGACACTTCACCCCAGAGAGTCCCTGAAGGTCCAACACAAACACCTCGCAAGTCCTTCCTTGGTCAGCCTCCTCCAGGTATTCCAAGGCCCATGATGACTCCACCTGGGCTCACTCCACCCAGAGCAAGGATGCATTTCCAACAGAGGACAAGCCGGTCTAATCATCCATTATCCAGTATGCCAAGCATGCCTGCTATGCCAAGTCCTGGACCACACTTCATGAGGACACCTGTGACACCATTTCCTGGACACCCATTCCCCATGATGCACTCAGATCCAGGCCACATGATGATGCAAAGAGGTTTGTTAAACTTTCCTCCAAGTCCACAGTACTTACAGTTTGCAAGCCCTCAACTCCATAACAGAAGATTCCAAGAAAACCAACCTTTTCCACCAAGAAGCCCTTATGACAACCGAAACTCCGCCAGGCAGCGTGATGGAGTAGAACTGCGTCATCAATTCACTGACTTGGAAAGGAAAATCCATAACATACTGAATGTGGTGGAAAGGAGGCAGTGGTCAGATGATCCATATGCTGGGTTAATGACTCGAAGAGAGAAGGAATGGCTGCTCAAAATTCAACTTCTTCAGTTAACCAGCTCTGAACCTGATCTAGACGACTATTACTTTCAGACGTACTTGAGGAGGAAGGCAGCCAAGGAACGCGCAAGACAAAATGATGGTGTTGAGCATGCTGGTCGCGATAACAGAAGCGGTAGAGAAACAAGGAAGATGGCCCTGCCACAGTTTGAACGAGAAAGAAAGAATTACACACCTTTGGACTTCCATGGTACTCTGGGCAAGTTAACGTCTTCATCTGTCCAACATCCACGACAAATGATGGACTTAACAGGCATCGGAAAAGGATCTGACCAGGATCGACAAGCGGGTTCAACACCAATGAAAGATACTAAGCGCCGTGGGCAGCTGCTGTTTTCCATAGAAAAGAGTTATGACTGTCTTTTGAGTCTTGAAAGTTTGGAAAAAAAGTTGTTACATGCTGAAGAGCAGGAGAGAAATGAACTTCTTGAAGTTAGGCAAGCAACGTTGGCTAAACTGTTCAATCTTCTAAAGCTATCCACTGACGAGTCCGACAGaTGCGATGACGACTTTTTTGTGCAGTTTTTGTTGGTCCGCAAAGGCAAAGTCCTTCTTAGTCGAGTTTTGCCTCTGTTAAACAAGGGTCAGGTGGAAGCTGTTTTATTGGCCATTACAACGAATATCTCGACACTCTTGAAAAAGGATTTGAATGAAGAGATCTTACTTCATCTGATGGTGCCGCTAAATCGAGTCTCCGAGCTGGTTTCTCTTCGAGTTGTAATCCAGAGTATAACAAATTTGGTATCAGGACCTAGCGTAACAAGTGGTCAAGATTCACCTCTGTCTCTTGTCTTGGTCAATCAGTTTGGAGTTGCTTTGCTAAGTGTGTTGTTAGGAAGAGCAGCCATTATGTCCAGTAATTTAACGGAATCAGATGACGATACGCGGAAGTCCTGGGTGAACCTTGTCTCTCAAGTGGCCAAAGAGTTTCAAGATGTGCCTGTGAAACAACTAGGAAGAAACCTTGAAGCGGCAGATAGATTAGTGGCTTTATTATCAACTTGTACAGATCTACAGACCAAGGCCCTGTTACAGGATCACCTCAGGTTGGCCGCTTCAACAAAAGCAGAAGTCACAAGTTAG

Transcript

ENSJQFT00000010813

GATGTCAATATGGCGGATACTTTCTttgggtttgatccacagatccCTGCATTCGAGGACGAAGAGTTGTCAGAGTTGGATCCAACATTGACGAATTTGGGTGCAGGGGATGAGTACGACGAGTTAAACGAAGATACTTTCGGTGCAGGGGCGTTAGAAGATGACTGGGAGAATTCTCACCGAAAATTAGTAGATATTGAGGTTGGAAGTACGCAATCAGCAGACTTTGACAAGTGGCTCAGGAGAAAGGGCCTTCAACATGGCGTGGAAAATGAGACAGCACTCAAAGGAACTGAAAGACCTGCCAATGATGATGAcgaatttaacgatgatttagATCGAGAAGAGGAAATTTTGGAGCAGAACTTGGCAAAACTTgtggatgatgatgaaaatgagcCACGACCCAGCCCAAGCTCTTCATCCAAGTTTAAGGACATCAAACCACAAGCAAGACTTGGCCCAGTATGGGATGGCTCTTCACCATTATCTAGTCCAGCTTCATCGACTTCATTGCATGAACTGATTTCACCATCTGCTAGTATATGGGGATCACCTTCAAAAGTGGACAAAGAGAATGCTAACAAAGGGCCAGTGAATACTCAATCACCAGCTTTGGCTGAACTACTAAAGGCAGAGACTGAAAGGTTAAGGTTGCTGAGAAGACCTTTCTCTCCAGCATTTGAGGATGATTCTATTGTTCAAGCAATGCCACGCCAAGGCCTCATTCCCCCAAGCCAGTTTATGAAGAAACCTCAGCCGGTTAATGCTATCAAACTAGAGGATTTAGAGAAACAACTTACCGGTGACACTTCACCCCAGAGAGTCCCTGAAGGTCCAACACAAACACCTCGCAAGTCCTTCCTTGGTCAGCCTCCTCCAGGTATTCCAAGGCCCATGATGACTCCACCTGGGCTCACTCCACCCAGAGCAAGGATGCATTTCCAACAGAGGACAAGCCGGTCTAATCATCCATTATCCAGTATGCCAAGCATGCCTGCTATGCCAAGTCCTGGACCACACTTCATGAGGACACCTGTGACACCATTTCCTGGACACCCATTCCCCATGATGCACTCAGATCCAGGCCACATGATGATGCAAAGAGGTTTGTTAAACTTTCCTCCAAGTCCACAGTACTTACAGTTTGCAAGCCCTCAACTCCATAACAGAAGATTCCAAGAAAACCAACCTTTTCCACCAAGAAGCCCTTATGACAACCGAAACTCCGCCAGGCAGCGTGATGGAGTAGAACTGCGTCATCAATTCACTGACTTGGAAAGGAAAATCCATAACATACTGAATGTGGTGGAAAGGAGGCAGTGGTCAGATGATCCATATGCTGGGTTAATGACTCGAAGAGAGAAGGAATGGCTGCTCAAAATTCAACTTCTTCAGTTAACCAGCTCTGAACCTGATCTAGACGACTATTACTTTCAGACGTACTTGAGGAGGAAGGCAGCCAAGGAACGCGCAAGACAAAATGATGGTGTTGAGCATGCTGGTCGCGATAACAGAAGCGGTAGAGAAACAAGGAAGATGGCCCTGCCACAGTTTGAACGAGAAAGAAAGAATTACACACCTTTGGACTTCCATGGTACTCTGGGCAAGTTAACGTCTTCATCTGTCCAACATCCACGACAAATGATGGACTTAACAGGCATCGGAAAAGGATCTGACCAGGATCGACAAGCGGGTTCAACACCAATGAAAGATACTAAGCGCCGTGGGCAGCTGCTGTTTTCCATAGAAAAGAGTTATGACTGTCTTTTGAGTCTTGAAAGTTTGGAAAAAAAGTTGTTACATGCTGAAGAGCAGGAGAGAAATGAACTTCTTGAAGTTAGGCAAGCAACGTTGGCTAAACTGTTCAATCTTCTAAAGCTATCCACTGACGAGTCCGACAGaTGCGATGACGACTTTTTTGTGCAGTTTTTGTTGGTCCGCAAAGGCAAAGTCCTTCTTAGTCGAGTTTTGCCTCTGTTAAACAAGGGTCAGGTGGAAGCTGTTTTATTGGCCATTACAACGAATATCTCGACACTCTTGAAAAAGGATTTGAATGAAGAGATCTTACTTCATCTGATGGTGCCGCTAAATCGAGTCTCCGAGCTGGTTTCTCTTCGAGTTGTAATCCAGAGTATAACAAATTTGGTATCAGGACCTAGCGTAACAAGTGGTCAAGATTCACCTCTGTCTCTTGTCTTGGTCAATCAGTTTGGAGTTGCTTTGCTAAGTGTGTTGTTAGGAAGAGCAGCCATTATGTCCAGTAATTTAACGGAATCAGATGACGATACGCGGAAGTCCTGGGTGAACCTTGTCTCTCAAGTGGCCAAAGAGTTTCAAGATGTGCCTGTGAAACAACTAGGAAGAAACCTTGAAGCGGCAGATAGATTAGTGGCTTTATTATCAACTTGTACAGATCTACAGACCAAGGCCCTGTTACAGGATCACCTCAGGTTGGCCGCTTCAACAAAAGCAGAAGTCACAAGTTAGAATTCACTGGGCCAGGAATGTCAAATAAGGACTATTTTCCATATTCTGCGTTGAAATGATCCTGTTTTCCCGTGTTAACGTAATTCATAATGAACAGCGAATCCGATATGAAAATGCACAGCTGTTCGTTGTGTTCTAATTTGTAATTCATTATAGGCACTTTGACTAAATTATGGGGTAAGGTGCGTCCAAAGCAACTGCTTATAAATTGTTTGGAATGACTCGTGTAGAACTTCCCATTCACATTGTTGTCCCCGTGGAGAGTGGAATTCTCTTGTTTCGCAGTATTTGTTAGCTTCAAGGAAGAAATGACCAAATTGTGGTCCGAGGCATCGACCAGTGTCTTGTTTCTCGTGGATGTCTTGCTTCTAGTAGATTCCTTGGGCCTCTTCACTTTCAGGTAGTAATAGCCGTGGCGTGTTCTTTTTTGGAACAACAAAGTAATTCTTTTCATAGGCTAAAttgtaaagaaaaagaaagagcaaagtaggataaaatttaaaatgcCTTTCGTTAAAAATCCCTTTAACTGCTACAGGCCAAATTAACAGATTTCCATAAATTTGTGGGTTGACAGAATTCAGTTCAGTCTTTATTAACTTTTTCTATCGCAATGAAACCTCGTTCGGATTGTTAACTGTTAAATTTTGTGGATGGTTAATGAACGCACTGTAACCAAATACATTTATGGCCTTAATAATGTAATAGAAAGGCAGACGTAATGAGTTAGTGTGATGCGTACAGCTCGTATAAACGCGTGTTTGTCACATTCTAACTTGGACCCTTTCGTGGTGTGTTAGTTCACAAAGCGCACACCTTTGTATTTCCTATTTCTGTTGTTACCAGCAAACCACAGCAGAAATTGTTTCGTGCAGTTTACCATGTCTTGTTATCCATTTGTGTAGCCATTCTGTGCGTAATTTCTCGTATTGCAATTTGAAGAAGCTGACTTGTAATTTAAGACAGAGTCTGGATAAAGAAGGCATTCAACAAAATAAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09770 all species →	PAT1	Topoisomerase II-associated protein PAT1	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019167 all species →	Domain	mRNA decay factor PAT1 domain	Interproscan
IPR039900 all species →	Family	Pat1-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21551 all species →	TOPOISOMERASE II-ASSOCIATED PROTEIN PAT1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000290 all species →	Biological Process	deadenylation-dependent decapping of nuclear-transcribed mRNA	Interproscan
GO:0000932 all species →	Cellular Component	P-body	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0033962 all species →	Biological Process	P-body assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12617	PATL1, PAT1; DNA topoisomerase 2-associated protein PAT1	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.