Gene detail

Detailed information of ENSJQFP00000012883.1 in Rhodactis osculifera

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Rhodactis osculifera · all data for this species · gene families

Sequence

CDS

Transcript

ENSJQFT00000013421

TTCTTTGCTGAAAGTGAAAAACGACTGTTGCCTTCTAAATTATAATTAGACAGAGAACTGTATCTGccaaaagaagacaaaaatatGCGATATACAAACCAATAAATCGGTAGTCGACGCAGAGCCTTTCTTTTCGGTTAGTGTAAAACAACTAGGGAGGGGTAGGGCTTAATTTGACCTACGCTACCCATAGTTCCTCGAGGTGCAAGGAGTGTGAAATCTAAACAACATGGCAGTTAAATACTGAACGAAGGAATCGCCGTCAACAACATCGTGATCGAATATTGCAAACATTAACCATGGAAAACGACGACATCAAAGAGGGTTTTATTTGTCCGATGTGCATGAAGGAGTTGGTCAGTGCGGTGCTCTTGCAGCAGCATTTCGAGGAATGCCACTCCAACGATAATGACAAACTGAGGAACATTCGTGGGATGTTTGGAAAGGCGAAGAGGAAATTTATGGACAAGATAGACGGCTTTGAAACAGCAGCTGGAGCCACGATAGAAACGAAAGGTGACGGGGTCCATGAACCCGTTCTCAGTAGGGGAGTTGATCCTTTTCTATGGGACGATCAAGATTTTGGTGCTTCCAGAAGCAGATTTAGAGAATTCAGGGAAAGGAGAGATGCAGAGATTGACAGATTTGTTGTAGAAACCAACAAGATCTTAATTAGGCTTGAAAAGTTGCTAAGATCAGGAGTTCATGTAATAGATTCTCCTGCTTTGTTACCCTCTCGAAAAGGTAGAAAGTcgTTAGAAAGACGGCTAGTTCCATGGATTGCTGACAGTGAAGTGCGATTCTGCCCACTTTGCAAGAAGCAGTTCAATGTTGCTCGTCGCAGGCATCACTGCCGACTGTGTGGTGGAATAATGTGTGGGAAGTGTTCAGCCTTTGTGTCCGTTTCTTTTGCTGTGACTGTGTTAAACTTAGACGCACCTGGAGCGGATGACCTTCCCCGCAGAGTGACAAGTCATTCAAAAGATGACTCAGACGAAGCTGGAATAAGAACATGCCATTCATGTGTGGATTGTTTAGAAAGGTACGACAAGcaggagaaagaaaagaaatcaaaGCCCGCCACTGTTCAGCTCTATGAGAAAATGAAGAGTTGCATGGCAGAGGCGGAATCTTTACAACCAGTTTACATCAAAATGGCCGACTCCATTAATTTAGGCGACATCCAATATGATTTGGAGGAAGCGTCACACGTGAGGGCAAAGTTACTCAAGATGTACGAATCAATTGATGTCATAAGCAAAAAAATCGCAGCACTTGGCATGCAGTCTGAGAAACCTCCCAGTCCTCACGCGGTGAAACTCCAGAAAGGAATCCGAACCTACGCCACAGGTTACctacaagagaacatgttcacgCTGCCAAATTTACCACCGCTTGACAAGGTTAATAAACTGCAGCAAGAGAGAGCAATTTCCCTCGCAAGGAAGGCAGACGAAGAGAAGGCTCAAAGGGAAAGAGCCATGCAGGAGCGCCTTGAGGCAGCCAAGCAGCGGCAGCACAGAAGGCAAGCCAGTGGGAGCTTAAAACGAGAGCCCACGGTCAAGGTGGGGACCGGTCCGCGGACTTCGGAGCCGGTCGTCGGAAACGGCTGGGGCCCAGTCCCCGTAGCAGAGGGCTCATCACCAGACCCCATGCTTCAACAGATTGACATAATTAAGGGTTACTTGACGCAAGCAAGACAGCAGCGAAAGATCGACGAGGTCGAAATGCTGGAAAAGAACTTAATGGAACTTGAAGAAGAATATATAAGGCAACAACAGGGAAGATGACAATCTGTTTTACTCTCTTCAAAATGCAAAGAGTTTGTTATTAACCCTCTCACTACCAGGGAAATATTAAAAGATTAATGTTAAAAAAAGTAACTTACTAaatgaaactactgttcaatagctttccacagaatggttACACTCTATGGTTTTATCCAACCAACGTTGGAATCAAATATGTGGGCTCAAATAGGGAagttggtagtgaaagggttaatacggagAACATTGGTTCTGGATGAACAAAGTTGTTTCGAGTCGTTGTAATGAGTTAAATGTTATTTTGAGTTATTACTGGAACCATCCCATATGTTGTACATAAATAGCTATTTTTTTTGGCATAGGACATTTGAACATCCATGGCACGGAGACAAAGAAATTTTTGTATTCATTGTATGAAAATTGTCCTTTGATAATATACGTTCACGAAAGAAAAATCGTATTTCAAAGATTCTTCGTTGGTGAAGTCTTTAACTTTCTATACTAAGAAcactgagaaaaaataaaagaaaatctcATAAGGTAACAGTTACATTATACGTACAATGAATGTTATGTGTGGAAATCCCTgatataacatcaaaatctccacactaacatggtaagcaatggatggagatcagtaaggaaaATTAtcctgatgtaacatcaaaatctccatttTTACAAGGTAAGAAATagatggagatcagtaaggaaaattgtcttgatgtaacatcaaaatctccatactaacatggtaagaaatggatggagatcagtaaggagaattatcctgatgtaacatcaaaatctccacactaacaaggtaagaaatggatggagatcagtaaggagaattgtcctgatgtaacatcaaagAAACGAATGTATAGTGCTCAGCAAAGTTTCTTGTTTTGAGCACAAGAATGAACAGTCAAAGCAAGTTGGTCAACAGTGAAGTCCATTGCAAACAGAACGGAATGGCGACAATTTTCAATGCGATTTCACGTCCAAAAT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11464 all species →	Rbsn	Rabenosyn Rab binding domain	Domain	Interproscan
PF01363 all species →	FYVE	FYVE zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021565 all species →	Domain	Rabenosyn, Rab binding domain	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR017455 all species →	Domain	Zinc finger, FYVE-related	Interproscan
IPR052727 all species →	Family	Rab4/Rab5 effector domain-containing protein	Interproscan
IPR000306 all species →	Domain	FYVE zinc finger	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR036531 all species →	Homologous_superfamily	Rabenosyn, Rab binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13510 all species →	FYVE-FINGER-CONTAINING RAB5 EFFECTOR PROTEIN RABENOSYN-5-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12481	RBSN, ZFYVE20; rabenosyn-5	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.