Gene detail

Detailed information of ENSJQFP00000013965.1 in Rhodactis osculifera

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Rhodactis osculifera · all data for this species · gene families

Sequence

CDS

Transcript

ENSJQFT00000014525

GCCATGGCGGACACAGTGTAGCTGCCAACTTTTGCACCAGACAAACAAAGTGAATGCCTTTTATTTGGTTTTTATTTGGAATTCATTGAAGAATGGGGAAGGAAAAGGCAGGGGCACTTACCCCAAAAGCCATATCAAACAGGATAAAGGCCAAAGGCTTGCAGAAATTGCGGTGGTACTGTCAAATGTGTCAGAAACAGTGCCGAGACGAGAATGGCTTCAAGTGCCATACTATGTCAGAATCTCACCAGCGACAACTGCTGTTACTTGCTGATAATGTTGACAAATATTTGGACACCTTCTCAAAAGAATTTGAAGAGTCATTTTTAACATTGTTAAAAAGACAATTTGGAACTCGCAGGGTTCGTGCAAATCAAGTTTACCAGGAATACATAAGTGACAGACACCACACCCACATGAATTCTACTCAGTGGGAAACCCTCACAGATTTTGTAAAGTGGCTTGGAAAAGAAGGTCTGTGCAAAGTGGACCAGACTGAGAAAGGATGGTTTATTGCCTACGTTGACAGAGATCCTGAAACGGTCGAGAGGCAAAAAATGTTGGCTGCTAAGGAGAAACTGGAGCTTGATGACGAAGAGAGAAACGCCAAGCTACTTGAAAAACAGATCGAAAGGGAGCTGGCACGGAAAGGCGAAGAGCAAGAGTCGGTTTTCACAGAATTAAAGCGGGAAAATGAGGAAGAAAAGGTTGCCTTCAGTATGCCAAGTAGCAAACCAAAAGAACCCGTGGCGGGTCCCAGTGGCATGAAACTACCATCGACTAGAATCGCTCACAATCCATTTGCTTCGTCAAGTTTGGATCAGAAGGAGAGAAAGAGGCTGAAAGAGCAGGAGAAGACAAAGGACAGTTTGAAAAGGAAATCTGCCTTGGAAGAAATTATGGAGTTGGAAGAAcagaaaaagatgaaaataaacCGAAAAGAAAATTGGTTGGTAAAGGGAATTGTTGCCAAGGTAGTTACCAAAAAATTGGGAGAAAAATACTATAGAAAGAAAGGAGTGATTAAGGGTGTTGAGAATTTATTTGTTGGTGTTGTAAAAATGACGGATAGTGGAGATGTGATCAAGATTGATCAGGAATACTTGGAGACTGTCATACCTGCCTTAGGCAAGGCAGTACTTGTTGTGAACGGTGCATACAGAGGAACTAGAGCCTCTCTCATATCACTGGACGAGAAGGCTTTCTCGGTTACAGTGGAGCTGAAAGATGGACCTCACCGAGGTAGAAGAATAGAAGGAATTCCATACGAAGACATTTGCAAGCTGGATACGTGACAGTGGGTGGAATACTAAGTATTCATCAATGTCGTTCCCAGGAACAAATGGATGAGATCCTCGAAACGAGATTGAAATACTCCGTGAAGAGCACGCAAACTATAACAGTGTCATAGACTGACGATTGCCTATCTGAAAATCAAAACATTTAACGCCCCGAAATCACCCTGGACGTTTTATTTTCCTACATGGCATGAAAGGGAACGTTAATTTCTACcgtagggttttttttttctacttccTTTTTGCATGGCTTTTTTTTTCGAGCATCTTATTTCGCGCGATTTTTGTAGTCATGTCTTGACCATACCTTATCCTGTTACAGTAATCGCGAAACACTAAACTAATGCTACCATTTCACTCTTTTGTTTTTACGGTCAAACATGCAGTCGCATGAATCTTTATTTATTCTTGATctcgtgtttttttcttttttataatgGTTAGATGCGTATCCTCGAATTAATGTTCGCAGTGTATTGATATCCATACTTCTGTCGCAAACAGCTCCCTTGCCTATCAAAGGTTCCATGGCAATTCCCTTATCCCCTTATCGTGCGACAATTTTCTTATCACAGAACAATGTCCATTTCGCTAGACAGAATAAATTCTAAATGCCAAGATTTTAAATGCATCCCGCTGgtctttattttacttttattctTTAAGCGTTTAatcactctgcaaattctcctttcttattgccgcacatacattacttatagtcgagaccgggagaatttcttaatctaccaacggaattcatgttgggtgatcatatcctttattctcatgactttagtgactgagaatgcgttaagTCTTACAAAGAgcaatttgacgctggtcactgtTGGGGCGTAAAAGAGTTAAACGACATTCCGAGGCAGGGGATTTTGCCAAAGTTTTTTGCCGCCTCGAGATTTGTCGATACTTGGATGGCAATCATTCTTTTCTTTGCTCACGTAAACATACGTACCAACTTGCTCGCATTGCGTT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18131 all species →	KN17_SH3	KN17 SH3-like C-terminal domain	Domain	Interproscan
PF10357 all species →	Kin17_mid	Domain of Kin17 curved DNA-binding protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038254 all species →	Homologous_superfamily	DNA/RNA-binding protein KIN17, WH-like domain superfamily	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR019447 all species →	Domain	DNA/RNA-binding protein Kin17, WH-like domain	Interproscan
IPR014722 all species →	Homologous_superfamily	Large ribosomal subunit protein uL2, domain 2	Interproscan
IPR041330 all species →	Domain	KN17, SH3-like C-terminal domain	Interproscan
IPR041995 all species →	Domain	Kin17, KOW domain	Interproscan
IPR037321 all species →	Family	KIN17-like protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12805 all species →	KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003690 all species →	Molecular Function	double-stranded DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan
GO:0006974 all species →	Biological Process	DNA damage response	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13102	KIN; DNA/RNA-binding protein KIN17	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.