Gene detail

Detailed information of ENSJQFP00000016112.1 in Rhodactis osculifera

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Rhodactis osculifera · all data for this species · gene families

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06220 all species →	zf-U1	U1 zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013085 all species →	Domain	U1-C, C2H2-type zinc finger	Interproscan
IPR017340 all species →	Family	U1 small nuclear ribonucleoprotein C	Interproscan
IPR003604 all species →	Domain	Matrin/U1-C-like, C2H2-type zinc finger	Interproscan
IPR000690 all species →	Domain	Matrin/U1-C, C2H2-type zinc finger	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31148 all species →	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN C	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0000387 all species →	Biological Process	spliceosomal snRNP assembly	Interproscan
GO:0000395 all species →	Biological Process	mRNA 5'-splice site recognition	Interproscan
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0005685 all species →	Cellular Component	U1 snRNP	Interproscan
GO:0030627 all species →	Molecular Function	pre-mRNA 5'-splice site binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSJQFP00000016112.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.