Gene detail

Detailed information of ENSJQFP00000016953.1 in Rhodactis osculifera

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Rhodactis osculifera · all data for this species · gene families

Sequence

CDS

ENSJQFT00000017618

ATGGCGGACGCAAAGAACAAAAGAAAATTGTGTGACATGGATGCGGAGGAGTTCATGAGGTACGGCATCGATTCAGATTTATCCGGAGAAGAAGAAGACTGTCCTGTTAAACCTCTTGAGAAAGGTGAAGTTGCCGTTGCAGGAGAGACTTCTTCGCAACGACAGAAAAGAAAATCAAAAAGTGCAACTCACAAGAACCAACTTGCTCGACTGCAGGGAAAAGATCCAAAGTTCTTCAAGTTTTTACAGGAAAACGACCAAGAGCTACTGGCATTTGATGACTCAGACACTTCATTGGAGGGTGATGAAGATGATAGTGATGTAGAAGATGAGGAGATTGAAAAAAGGGAAACAGAAGATCAGACGTCCTCAAAACCAGAAGAGGAAGAACATGATGATGACAACAGTGCAGTTGGAGAACACCCAAAGGATGGTATACTAGTCACTATGGAGATGATAAAACAATGGAGATCAGGTCTTGAGAAACATTCACTTCATTCGCTGAAAGAAACTCTACGGGCCTTCCGTTCTGCGGTCCACGGAGCACTGGACATGGTAGAAAAGGAcaagttgtcaacaaaattgaCCTTCAAGGTAGAAGGAGACACAGTGTTCAATGCTATTATTCAGCTGTGTTTGAAGCACTTGTACAACGTACTTCTTCATCTTGTTGGCGGGATTCACAACAAACATGGAAAGAGGATTCTTCCGTCGTCACATGCAAAGTGGTCTCATGTGAGAACACCAGTCAAGCATTATCTAAATGATGTCTTGCATttgttgCGATCACTAGCTGAACCTACCATGCTGTGTGTCATCTTGCGACATGCACAACAGCTCATTCCTTATTACGCTTGCTTCCCAAAAATAGCGAAAGCCTTTATCAAGCGTTCAGTTCGAATGTGGGGTAGTGGAGAAGAACATGTCAGGGTTCTTGCCTTTCTTGGAATCAGAAAAGTTGCAACGACGATGCCGTCGTCACTGCTGGAATTTGCCATGAAGCAACTGTACATGAACTTTGTGAAGAATGTGAAATTCACGTCTCCCAGCACCAAGCCACTGATTGCGTTCATGCAGAACTCTCTGGTGGAAATGTTCAGCGTGGATCATCACGTGACTTACCAGCACGCGTTTGTCTACATCAGGCAGTTGGCTATTCACCTTAGAAATGGCATTGTACAGAAAAAGAAGGACTCGTATCAGTCAGTTTATAACTGGCAGTACATCCACTGCCTTCATCTCTGGTGCCGTGTGGTGAGTGAAGTGAAGAGTGGTGGAATTCTGGAACCTCTCATTTATCCTTTGGTGCAGACTGTCATTGGTTCAATCAAATTGGTCCCCACTGCAAGATTTTATCCACTTAGATTTCACTGCGTTCGCTCCTTAAACATTTTATCACAGGCAACAGATACTTATATACCAGTGGCGCCTTTCCTGTTAGAGATCTTGGAATCAGTGGAATTCAACAAAAAAACCAAGTTGTCGACCGCCAAGCCGACCGACTTTTCCTGCATTCTTAAAGTTTCCAAGCAGCACTTGGCCACTAAACCTTTCCAGgacGCGGTTATGGACCACGTCTTCGAACTCCTGCTGGAATTCTTCGCTATTCACGCACACTCGATAGCCTTTCCGGAAATAACTTTTCCTGCCGTCGTGAGATTGAGGAAGTTCATCAAGACAACAAGCGTATCAAAATATCGCAAGCTGCTCAAGCAGTTAGTCGATAAGATTGAAGAAACATCTACCGAAGTAACGGACCGTCGTTCCAAAGTTTGCTTCAGCCCTAAAGATGTGGAAGACGTGGAACGATGGGTGGCTCAGTACAGACAGCACCCAAATGCCATCGTCAAGTTTTACCACACGTGGAAGACCATGAAACCGTCGTTCCAACAACAGGTTGAAGAAAAAGTGAGCAAACAACCTCAAGACGGTAGCGAAGGTTCGAGTGAGAACGAAACGCCAAGTGCGACGAGGAAGAAGCGTCACTCCTCTGCGAAAACGGGGCAAAAACGCGGAAAAGACACGACAAAGAAACCTAAAAAGGGTGCCAAGAAACCCGGAGACAATGCTGTACCAGGCTGCCGCGGAGAAGAGGAAGACGTCGTGGAAGACTTTCAGTTTTCATCAGAAGAAGACTAG

Transcript

ENSJQFT00000017618

TGCACGTGATCTGTCTCAGTGTAGCTATAGGCCGTTTCAGATGCTCCTATCTCGCAGTTCTTACGTACTACATTTACAGAGTAAATTTAAAATGATCCCTGAGTTTCTCTCTTCCTCTGTCTCCCATTTCAAGCCATTTCCATTCTATCAGGGCGAAAGACCACTTGTATAGTTTTGTGGTGACATTTCAGGGAGTGTCAGTAAGTACATCTGGTAAGTAAATCTGGCAGGTACAATACAATACTCATACATGAACAGTCTACTACAGGATAACCGGAGCACGTGTGTTAAACCTCAAGATGGCGGACGCAAAGAACAAAAGAAAATTGTGTGACATGGATGCGGAGGAGTTCATGAGGTACGGCATCGATTCAGATTTATCCGGAGAAGAAGAAGACTGTCCTGTTAAACCTCTTGAGAAAGGTGAAGTTGCCGTTGCAGGAGAGACTTCTTCGCAACGACAGAAAAGAAAATCAAAAAGTGCAACTCACAAGAACCAACTTGCTCGACTGCAGGGAAAAGATCCAAAGTTCTTCAAGTTTTTACAGGAAAACGACCAAGAGCTACTGGCATTTGATGACTCAGACACTTCATTGGAGGGTGATGAAGATGATAGTGATGTAGAAGATGAGGAGATTGAAAAAAGGGAAACAGAAGATCAGACGTCCTCAAAACCAGAAGAGGAAGAACATGATGATGACAACAGTGCAGTTGGAGAACACCCAAAGGATGGTATACTAGTCACTATGGAGATGATAAAACAATGGAGATCAGGTCTTGAGAAACATTCACTTCATTCGCTGAAAGAAACTCTACGGGCCTTCCGTTCTGCGGTCCACGGAGCACTGGACATGGTAGAAAAGGAcaagttgtcaacaaaattgaCCTTCAAGGTAGAAGGAGACACAGTGTTCAATGCTATTATTCAGCTGTGTTTGAAGCACTTGTACAACGTACTTCTTCATCTTGTTGGCGGGATTCACAACAAACATGGAAAGAGGATTCTTCCGTCGTCACATGCAAAGTGGTCTCATGTGAGAACACCAGTCAAGCATTATCTAAATGATGTCTTGCATttgttgCGATCACTAGCTGAACCTACCATGCTGTGTGTCATCTTGCGACATGCACAACAGCTCATTCCTTATTACGCTTGCTTCCCAAAAATAGCGAAAGCCTTTATCAAGCGTTCAGTTCGAATGTGGGGTAGTGGAGAAGAACATGTCAGGGTTCTTGCCTTTCTTGGAATCAGAAAAGTTGCAACGACGATGCCGTCGTCACTGCTGGAATTTGCCATGAAGCAACTGTACATGAACTTTGTGAAGAATGTGAAATTCACGTCTCCCAGCACCAAGCCACTGATTGCGTTCATGCAGAACTCTCTGGTGGAAATGTTCAGCGTGGATCATCACGTGACTTACCAGCACGCGTTTGTCTACATCAGGCAGTTGGCTATTCACCTTAGAAATGGCATTGTACAGAAAAAGAAGGACTCGTATCAGTCAGTTTATAACTGGCAGTACATCCACTGCCTTCATCTCTGGTGCCGTGTGGTGAGTGAAGTGAAGAGTGGTGGAATTCTGGAACCTCTCATTTATCCTTTGGTGCAGACTGTCATTGGTTCAATCAAATTGGTCCCCACTGCAAGATTTTATCCACTTAGATTTCACTGCGTTCGCTCCTTAAACATTTTATCACAGGCAACAGATACTTATATACCAGTGGCGCCTTTCCTGTTAGAGATCTTGGAATCAGTGGAATTCAACAAAAAAACCAAGTTGTCGACCGCCAAGCCGACCGACTTTTCCTGCATTCTTAAAGTTTCCAAGCAGCACTTGGCCACTAAACCTTTCCAGgacGCGGTTATGGACCACGTCTTCGAACTCCTGCTGGAATTCTTCGCTATTCACGCACACTCGATAGCCTTTCCGGAAATAACTTTTCCTGCCGTCGTGAGATTGAGGAAGTTCATCAAGACAACAAGCGTATCAAAATATCGCAAGCTGCTCAAGCAGTTAGTCGATAAGATTGAAGAAACATCTACCGAAGTAACGGACCGTCGTTCCAAAGTTTGCTTCAGCCCTAAAGATGTGGAAGACGTGGAACGATGGGTGGCTCAGTACAGACAGCACCCAAATGCCATCGTCAAGTTTTACCACACGTGGAAGACCATGAAACCGTCGTTCCAACAACAGGTTGAAGAAAAAGTGAGCAAACAACCTCAAGACGGTAGCGAAGGTTCGAGTGAGAACGAAACGCCAAGTGCGACGAGGAAGAAGCGTCACTCCTCTGCGAAAACGGGGCAAAAACGCGGAAAAGACACGACAAAGAAACCTAAAAAGGGTGCCAAGAAACCCGGAGACAATGCTGTACCAGGCTGCCGCGGAGAAGAGGAAGACGTCGTGGAAGACTTTCAGTTTTCATCAGAAGAAGACTAGAGACGTGACGGGTGGACATTGGGGAAGTCGCGCAAACACCACGGCAACGTCACGCAACGTACTCCTTGACGGCCGTTTTGATCAATTTCTCCCGACCGTAAAAGCGTAGGATGTTTACTGTTTCGCTTGTCTGTGATGTTTCAAACGCAAATTTTATCGCGTGCACACTTCAAACCGCCCGTTTCACGTTGGTATTTAGCGAAACGTATTACAACTCGTTCCTAGAGTCTCTCCGAGGTTGAACGTATTATGCACTTGGATTTGTGTTGATTACCAACGACGTCCCAGATGACGCTGCCGCCGTGGTTTGCGCAAATCCCAATTGAAAATtacatgaaatgaaacaaactattGTTCCGAATTATGTAAAGCAAAGGGCCAATAATGAGGCTTGCGGTGGCGCACTTCGAACCAAAACGGGTCGAGTTCTGCGAAAGCCACTCGGCTGTAACCACGGTTCCATCGAGTGGTGCCTTAGCTACATTGCAACAACTCAGTTCAGAATTTGCCCGGCTGAAACCCTTTCTTATAATTTAGTCTAAGCGCcccaccccccttcccccccacgAGAACTCAATGTAACAGACTGTTTGGAAATtggttcatttattttttttctcgataaaataatattttgtacTGAAAATGAGACACTCAATGCAAACGGCAAATGTACACGAAAAAGGTCTTTggcaatttaataattaaatttcGTTTATCTCACCGACTCGATATATAATAACAATGTTGCAAACTTGTGACATGCTCGTCTTTGTGGCTCGTTagcgaaagaaagaaattattttacggagaactttggcgaaaagagttgagaaaacaaagtgacaaaactaaactattCAATCACAGCGTGGCTTAATTTTCCCAACTATCTATAACGAAAAGACGTCAGATATAAGCTTGTATTTGCAGTTCCCGTACTATTAAAAGGAAAACGagcttttttctcaaaacaataagggattaattgtACTTGTG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03715 all species →	Noc2	Noc2p family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005343 all species →	Family	Nucleolar complex protein 2	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12687 all species →	NUCLEOLAR COMPLEX 2 AND RAD4-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000122 all species →	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0003714 all species →	Molecular Function	transcription corepressor activity	Interproscan
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0030690 all species →	Cellular Component	Noc1p-Noc2p complex	Interproscan
GO:0030691 all species →	Cellular Component	Noc2p-Noc3p complex	Interproscan
GO:0042273 all species →	Biological Process	ribosomal large subunit biogenesis	Interproscan
GO:0042393 all species →	Molecular Function	histone binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14833	NOC2; nucleolar complex protein 2	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.