Gene detail

Detailed information of ENSJQFP00000017231.1 in Rhodactis osculifera

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Rhodactis osculifera · all data for this species · gene families

Sequence

CDS

Transcript

ENSJQFT00000017910

GTTTTCCCTCACAGCCTTGCGCCCATTTTCTGTACCAGTGGCGATTGGACTCAATCCGCCGGCAGGGAAAGGCAACCCAACTCAGGTcaggtgtattggacatgtgtgttCTGGTGCGCTGTTTTGTTCTGTTGCAAAACAGTTGTGGTGAGATGCAATCACTGCTATTTCCTACATTTTTTGTAGCTCTGATGAACAGAACCATTTGGTGATAGCAAGTGTTCAGGTCCCTAATGATGACACACAGCTTGACACAAGCCACTATGACAGTGAAAAAGGAGAGCTCGATATATGCCACAAAATCCTTGTATCATTGCAACAAAGACACCAACAGCAGATGTTCTTGTATTTGATTACACTAAACACCCCTCAAAACCAGATCCCAATGGAGAGTGCCGGCCTGATATTAGACTTAAAGGTCACACCAAGGAAGGTTATGGCTTATCATGGAACCCAAATGTAGATGGGAATCTTCTCAGTGCATCTGATGATCACACTGTCTGTCTTTGGGACATAAGTAATATTGCAAAGGACGCAAAGACACTGGAGGCAGTCAGAATTTTTACTGGTCACACAGCTGTAGTAGAGGATGTGTCATGGCATCTTCTCCATGAAAGTTTATTTGGATCAGTCGCAGATGACCATAAGCTGATGATCTGGGACACCCGCTCTACCAGCAGCTCAAAAGCAACACATACAGTCGATGCTCACACTGCAGAGgtcAACTGTTTATCTTTTAATCCCTATAGTGAGTTTATTCTGGCCACTGGATCAGCAGACAAGACTGTTGCATTATGGGATCTAAGGAACCTTAAACTCAAGCTTCATTCATTCGAGTCACATAAGGATGAAATATTCCAGGTGCAGTGGTCACCGCATAATGAAACAATTCTAGCATCCAGTGGAACTGACAGAAGACTGCATGTCTGGGACCTAAGcAAAATTGGTGAGGAGCAATCTTCAGAGGATGCGGAGGATGGTCCCCCAGAACTCCTGTTTATCCATGGTGGTCACACCGCAAAAATCTCCGATTTCTCTTGGAACCCTAATGAACCCTGGGTAATCTGCAGTGTTTCCGAGGATAATATAATGCAAGTATGGCAAATGGCTGAAAACATCTACAACGATGAAGAACTTGACACACCTGCGTCAGAGCTAGAGTCAGCAGGCTCTTAGGAAACAGTCCCTTTTTGAGATTTCTTGGGTCTGTGGATGGTGGACATATATCAGCCAAGACTGGCATCAGAATATTCCCTGCAGGCATGTGTTCAGCACCTCTGGTATTTTGTTCTCTGAGACTGAAAATACCATGTTTGCCTGTGGTTGCTATGGGAGTTTATTGAATTGTCGTACTGTCATGATTCTCTGTAGTCTTGAAGAATACAGTGCAGGTAAATAGTAATGGAAGGATGTAAATCCTTTTGTTGTAATGATCAAACCCCTTTTGATTCTAGTATTAAGTTGTTTGAATTGCATTCCAGGCATTATTATCCACCCTTTTCATGCATAAAGCAGGAGCCATCACTCTTTAAGGCAGATAAATGAAACCTTGCGCTCTCAATTTCGTTGTATACCATTTTATTGATAGGAATAACATACTGTATTTCAAGCGATTAGTCCACATACAGGAAAATCACTACGTTTTGTACTTAGAAGACAATTCCATCACTTTGAAGCATTTATGGTTTGTGAAACAAGCTGCTCTATGGTATTAAATTTTATCCAAATTGTGCTTTTGGCATATCGTGAATAACATCAGTAGCCTTAACTTGTGCTGTAAGTAAGAGTTTAAGCTGTCCTGTGATAGCAAAATAAAGCCTACCATGCCAAGGAATTACACAATATTTAATAAATAGAAATGGCTATTACAATGGAAAGTCAGCATGTGGTACCTGGATGCATCATGGGAGTACCATGCGTGCCTTGCAGGCACAACAGACTACCAAAAATTAAATTTCGTCAACAGTATGCAATGGAGTTGTCACCTCTGACAGTCCCATCTTCAGAGTGCTACTTATTTGTTTTAGGAATTTGACAAAAATGGCAGGATTTGAAAGTTAAAATCACAATTTTCAGAAAACACCATCTCTCCATACTTAGGAGAAATCGAGGCAACCTAAAAACCTTTTAAATATTCTTGCTAATAAATGTCCAGTCACTATTCAAAGGCCTCTG

Protein

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR050459 all species →	Family	WD repeat RBAP46/RBAP48/MSI1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22850 all species →	WD40 REPEAT FAMILY	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006338 all species →	Biological Process	chromatin remodeling	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0016575 all species →	Biological Process	obsolete histone deacetylation	Interproscan
GO:0016581 all species →	Cellular Component	NuRD complex	Interproscan
GO:0031491 all species →	Molecular Function	nucleosome binding	Interproscan
GO:0035098 all species →	Cellular Component	ESC/E(Z) complex	Interproscan
GO:0042393 all species →	Molecular Function	histone binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSJQFP00000017231.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.