Gene detail

Detailed information of ENSJQFP00000017535.1 in Rhodactis osculifera

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Rhodactis osculifera · all data for this species · gene families

Sequence

CDS

Transcript

ENSJQFT00000018222

tttgatCATACTAGGAGGATGACGTCACAGATGTTTCCTGTTTTTGTACGGTATAATTCAAACACAAATATACCGGTTCAGATAGATACACAGTGGAATGTAGTGAAGCTGAAAGAGGAGATTGCAAACCTTCTAGGGGTGGACCCCAAAGAAATTCGTGTTATCTTTGCAGGCAGGGAATTGAGGGATGGCATCAAACTAAAGGACTGTGAGATTCCAAATCAGAGTGTGATTCATGCCGTCCGGGGTGGTCGTGGGTCATTCAACAGCAAAGCAACCCCTTTGTCTCGAGTCACACTAGGATCTGTGGAAGAAGAGCCAAGCTCAACCACATCACCAGAAGGAGCTTCTAGCCAGCATCTGGCCAAATATTATGTCTACTGCAAGGTTTGCAAGGATGTCTCTGCTGGAAAGTTACGGGTCTGTTGTTCTCGTTGCAAGGAAGGAGCCATTATTTTATGCGAGGACCCAAGCAGTTGGGAGGATGTCCTACAGTCTAGAAGACTTGGCGGATCATGTAAAACTAGTGGTTGTGGTGGAGATGTTGTGGAGTTTTATTTCAAATGTGCTTCTCATCCTGCTGCAGAAGGGGATAGATGCGTTCCTCTACGTTTGATTCGCTCAAACACAAGGGATGTACCTTGTTTGGCTTGTACTGATGTCAAGGATCCTATCTTGGTGTTCCCTTGTGAAGAGGGCCACTCAGTTTGCCTGGAATGCTTTGAGACTTACTGTATGACAAAGCTTAATGACAGACAGTTTGTACAGTCAGATACCCTTGGTTACACCCTGCCCTGCCCAGGAAGCTCAGAAAACTGTCAAAACGCGCTGATTTCCGAGGCCCATCATTTCAGGGTGCTGGGGCAAGATCAGTACGATCGATACCAAAGGTTTGGAACCGAGGAGTGTCTGCTAAAGATGGGAGGAGTCTTGTGTCCTGGCCGTGGTTGTGGGATGGGACTTCTACCAGAACCGCAGATGTGTAGTGTTAAATGTGGTAGATGCCGGGTTAGTAATATCCTTCAGCACTTTTCAGCGTTCTTAAGGTTGCTAACAATctcgttttctttcaaaattggATGCTTTAACTGAATTAGAATTGGCTACTGAGGCGTTGCAGGAGAGACTTATGAAAGTGCCAACTTATGTTCTGCAAAAAGCTGTCACATTTCAGAACAGAAAGGACCTTCAAACAGCACAATCTGAATGATTTGAATTCGCGTTTTGAGTGACTAGTTGCAACGATTACTAAATCAAACCCGATCTTAACCGTAAACTTGTGGGTCCCAAAGCCGACTGATCAAAAACTGATTTTCCACCACTATCTTTGAGAACGGACCACTTAATAAGGATCGGTGTGTCTCAGAGAATCACGAAGAAGAAGTCCCATCCGCTTAATAGCGAGTTAATCTTTAAATATTGAGCCTGAAAGGAACAAGTATCCGAAGTTGTCAGTTTTTGTTTCAGGCACTTCCCAGCTTTTCTTATGAATTCCATCTTTCCCTTGTGGTGCCGAATAATAAATCATAGATGTAGTTGGCGGTTTTAAAACCAGAGGATAGTTCTATCGTCTTGGGTTGATGATGTTATCCGTTTGTGAAATGTCCAAGGCCTGATTGGAAGAAGTCTATTTTGTAACCCTTTAAAACAACGCCTTTTATTCTCTGCGAAGACAATTTAGAATCTAGGTTTCAGACCGGAAATGTAAAGTAGCTTCATAGGGTGCCTCACCCCTTCCGGTATGCCCCGCCCGGTATGCCCACTAGTGTGCCCCCTTCCGGTATACCCTGCCGGGTATGCCCACTGGTGTGCCCCCTTCCGGTATACCCTCTAGTCTTCCCGCCCCATTTGTGAAACTTAGAATTTCTCAAATTTTATCGAAGTAGTCATTTGTTGGGATCAGGTCGTTTTAATTGTTGCGATCGTGTTGTGTATTTGTGGCTTCAGCTGGAGTTTTGTAAAAGATGCTTGGAACCATTCCAACGAGGCCACTCGTGCCGTCAACGCCAATCCGTACCAAATGCTGCGTCGACATCTAGT

Protein

Gene family

Family type	Membership / link
Ubiquitin family	ULD\|UBL\|NEDD8 · all ubiquitin genes in this species
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_Other · all ubiquitin genes in this species
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_PIM · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 activity\|RBR · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17976 all species →	zf-RING_12	RING/Ubox like zinc-binding domain	Domain	Interproscan
PF00240 all species →	ubiquitin	Ubiquitin family	Domain	Interproscan
PF17978 all species →	zf-RING_14	RING/Ubox like zinc-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR015496 all species →	Family	Ubiquilin	Interproscan
IPR000626 all species →	Domain	Ubiquitin-like domain	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR041565 all species →	Domain	Parkin, RING/Ubox like zinc-binding domain	Interproscan
IPR047534 all species →	Domain	E3 ubiquitin-protein ligase parkin, BRcat domain	Interproscan
IPR044066 all species →	Domain	TRIAD supradomain	Interproscan
IPR047535 all species →	Domain	E3 ubiquitin-protein ligase parkin, RING finger, HC subclass	Interproscan
IPR003977 all species →	Family	E3 ubiquitin-protein ligase parkin	Interproscan
IPR041170 all species →	Domain	RING/Ubox-like zinc-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10677 all species →	UBIQUILIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0031593 all species →	Molecular Function	polyubiquitin modification-dependent protein binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04556	PARK2; parkin	EC:2.3.2.31	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.