Gene detail

Detailed information of ENSJQFP00000017768.1 in Rhodactis osculifera

Genomic Location: chr3:19463613...19484074
NR annotation: no NCBI-NR hit recorded
Species Rhodactis osculifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSJQFT00000018455

ATGTCTGTGGAGTCGGTCTCGAGGCGTGTTTCCCGTGGTGGAGGACTTGTTGTTCGACCGCAACCGATCAGTGACAAGTCCTATGTGGAAAGTGTCGTGAGCTTTCTTCACGACGTCGTTCCTCAGGCTGTGACTGGAGGACAGAAACAGGAGGACAAGGAAAGAGTTTTGTGGGTGAAGTTTATAGAGGCAGATGTCAATGATACTGGCCTTTACCATGAAGACGTCTCATCAGGAATGGCATTACCTCTTGTGTTGATTCTTGGTTACACCAATGGATTTCATGTTTGGATCCTCCCTTCTTCAGGTGAAGCACAAGAggtgttatcccttcgtcaAGGGCCTGTGAGACTTGTTCGCATGTTGAAAACTCCTTTGGAAGTTGTAAAATCCAAAGATGAGTTTGCAACAAGAAGACCTCTTTTTGCTGTGTGTGATGCAGCAAGTCCCTCCCTACCATTCTCGACAGTCAATTTGTGGTCACTGAGCACTGGTGATCAAGTTCACTCTATTGGCTTCAAGTCTGAGGTTTATGATGTCCTCTGTAACAGAAGGTTGATGGTGGTAGCTCTTCAAGAGAAGATTGCAGCTTTTGATGCTTGTACGTTTAAGAGCTGCTTTTGTATCACAAGTTGTTACCCAGCACCCAGCCCAAACCTCAACCCATTAGCACTGGGTGTTAGATGGCTCGCCTATGCAGATCGCAAGCTTGTACCTAACCATCAGTCCTGTGGGGGAGTGTCTGGAGACAATTCCCAGTCGTACACAGCCACAGTTATCAAGGCTGCCAAGACATTGAGCAGAGGCTTGACAATGTTTGgaGAGACAGTGGGACGTTGGACAGGTTCAGACGTACCCAGTGACTTTGGAAATCAGAAAAAGTGTCTGGTGAGACCCGGGGTTGTCACAATCGTGGATACATTAAGAATTGGCAATGGAGAGTTTTGTGTGCAGGAAGATGACCATGAGGGTTGTGGAATTGTGGCACATTTTCCGGCGCACGCTGGGCAGCCCCTGTCTTGCATGTCTTTTGATCCAAGTGGCTCTTTGCTGGTGACTGCAGATGTCCTTGGACATAATTTCCACGTGTTCCATGTTCTACCACACCCCATCTGCCCCTCATTAGGGGCAGTCCATCACCTGTACACACTCCACAGAGGAGATACCACCGCTACGGTTCACGGAATGGCGTTTTCATTCGATGGTCGTTGGGTCTCAGTCTCTACTGTCCGTGGCACGGTCCACGTATTTCCCATAACTCCATATGGAGGTTCCATCACAGTCCGTACTCACTCGTCTCCCCGCGTGGTCAACCGAAGTAGTCGCTTCCACACCAGTGCTGGGTTGGACGACCTGGATCAAACCTCCACGCCTTCAGGTCGTCACAGTCCCTGCAGTGGCGGAAGCCAGAATTCGTCAGCTTCACCCAACGGCAGCCCACTCGGCTCCGGAGGCACACTCCTTGCCAGAGACTCCTTCACCCTGGCGTCAACCAGCAATAACGGTTTGGCGAACCCTCGCCTTCCTCCTCTGCCTCATCCAGTTCCAGTTTCCCCCCTCTCCCAGATACGAACACCCACGGGGCCCCGATGCAGCGGGCCGTGCTGTACTGGGTCTGCGCAGCACTCTTCCAGGTGTAATGGTCGAGTAGGACTGGAATACTCGCTGGGTGTGGCAATGACATTTGCACCTTCCAGGGGATGGTTAGGCGGAAGTCCGAACACAGCTTGGGCAGAACCCTGCCGATCCTCCCCAGTGGACTCGCTGTTCATTCTGGACCTGCATGGAAACTTAACCGAGTATGTGCTGGAACCACAAGGAGTGAAGACCGTGCCTCAGAGCGACGATACCCCCTTGGAGTTAATCACCTCATCCAGAGCCCAATGGGCGCTAACAAgGTGTGCAAGCTGGCCAGAGAGTAAAAATCCAATTGTGAAAGAAAATGCCTTGCTGATGATTAGGTTTCCGTACACAGAACATACTATACGTACTGAGAAACAAGGAAAGAAAAACGACATGGACAACGAGTCCGCCTTCACGTTCTCTGGCAACTGGGTGGGTCGCTGTGATACTTGCTGCAGCAGCGACGATCAGTGGCTTGCTTACATCGACATGGAGACACATGCAGCCCCGCACCGCCGCCTTTGGATGGGTCCCCAGTTCTCGTTCAAGACCTTCCAACCGCCTGGATCTTCCTCCGCTTCGTCCACACACAGCCTGGGGGACTCCAGGACTGGGAGTTCGGGCAGTGGAGCCACAATTGCAGCTTACCGCGAGGGGCACCCGATGGACTTCTACACCGAGGAACTCGACCTGCAGAGCTTGAGGCTGCAGCCGGTGCGCTCCGACCCAGTTCCCACTCCAGCTGCTCGATTCGCCTTCACCGGGTGCGTGTCACCCAATCTGGGTGGTAGCATGCCTTTGATAGTTGATAACGGCCCGGGAAGTTTGACAGATCCCTGGCCAAACCACGACATGTTTGAAGACAAGGAAGAACAGCTCGTTGAGACGCTGGCGGACGCTATGAACGACAATGCCACTGCACCAGTGAAAAGCGGCAAGAAAAGGACAACTTCGATTAACGGAGAGAACCAGTTTCAGTTTCAGTCGGATACGTTGGGGGGAGGAGTGAATGCGTTTGCCTCGTATTCTCCCTTAGAGACGAACCCGCTCTTTCCACCCGACTGGTCCTGA

Transcript

ENSJQFT00000018455

GTTTTGTGTCATCAAGGCAATGTTCTAAAGGAACAATATGAAGAAGCGACGATGGAAATGTGAACGAAACTGAGCTAGAAAGCTACGTGAACTTATTATCTTCATCTCTGAAGAACCTTTGGAGCTTCCTACAGCTCGAAGCAATGTCTGTGGAGTCGGTCTCGAGGCGTGTTTCCCGTGGTGGAGGACTTGTTGTTCGACCGCAACCGATCAGTGACAAGTCCTATGTGGAAAGTGTCGTGAGCTTTCTTCACGACGTCGTTCCTCAGGCTGTGACTGGAGGACAGAAACAGGAGGACAAGGAAAGAGTTTTGTGGGTGAAGTTTATAGAGGCAGATGTCAATGATACTGGCCTTTACCATGAAGACGTCTCATCAGGAATGGCATTACCTCTTGTGTTGATTCTTGGTTACACCAATGGATTTCATGTTTGGATCCTCCCTTCTTCAGGTGAAGCACAAGAggtgttatcccttcgtcaAGGGCCTGTGAGACTTGTTCGCATGTTGAAAACTCCTTTGGAAGTTGTAAAATCCAAAGATGAGTTTGCAACAAGAAGACCTCTTTTTGCTGTGTGTGATGCAGCAAGTCCCTCCCTACCATTCTCGACAGTCAATTTGTGGTCACTGAGCACTGGTGATCAAGTTCACTCTATTGGCTTCAAGTCTGAGGTTTATGATGTCCTCTGTAACAGAAGGTTGATGGTGGTAGCTCTTCAAGAGAAGATTGCAGCTTTTGATGCTTGTACGTTTAAGAGCTGCTTTTGTATCACAAGTTGTTACCCAGCACCCAGCCCAAACCTCAACCCATTAGCACTGGGTGTTAGATGGCTCGCCTATGCAGATCGCAAGCTTGTACCTAACCATCAGTCCTGTGGGGGAGTGTCTGGAGACAATTCCCAGTCGTACACAGCCACAGTTATCAAGGCTGCCAAGACATTGAGCAGAGGCTTGACAATGTTTGgaGAGACAGTGGGACGTTGGACAGGTTCAGACGTACCCAGTGACTTTGGAAATCAGAAAAAGTGTCTGGTGAGACCCGGGGTTGTCACAATCGTGGATACATTAAGAATTGGCAATGGAGAGTTTTGTGTGCAGGAAGATGACCATGAGGGTTGTGGAATTGTGGCACATTTTCCGGCGCACGCTGGGCAGCCCCTGTCTTGCATGTCTTTTGATCCAAGTGGCTCTTTGCTGGTGACTGCAGATGTCCTTGGACATAATTTCCACGTGTTCCATGTTCTACCACACCCCATCTGCCCCTCATTAGGGGCAGTCCATCACCTGTACACACTCCACAGAGGAGATACCACCGCTACGGTTCACGGAATGGCGTTTTCATTCGATGGTCGTTGGGTCTCAGTCTCTACTGTCCGTGGCACGGTCCACGTATTTCCCATAACTCCATATGGAGGTTCCATCACAGTCCGTACTCACTCGTCTCCCCGCGTGGTCAACCGAAGTAGTCGCTTCCACACCAGTGCTGGGTTGGACGACCTGGATCAAACCTCCACGCCTTCAGGTCGTCACAGTCCCTGCAGTGGCGGAAGCCAGAATTCGTCAGCTTCACCCAACGGCAGCCCACTCGGCTCCGGAGGCACACTCCTTGCCAGAGACTCCTTCACCCTGGCGTCAACCAGCAATAACGGTTTGGCGAACCCTCGCCTTCCTCCTCTGCCTCATCCAGTTCCAGTTTCCCCCCTCTCCCAGATACGAACACCCACGGGGCCCCGATGCAGCGGGCCGTGCTGTACTGGGTCTGCGCAGCACTCTTCCAGGTGTAATGGTCGAGTAGGACTGGAATACTCGCTGGGTGTGGCAATGACATTTGCACCTTCCAGGGGATGGTTAGGCGGAAGTCCGAACACAGCTTGGGCAGAACCCTGCCGATCCTCCCCAGTGGACTCGCTGTTCATTCTGGACCTGCATGGAAACTTAACCGAGTATGTGCTGGAACCACAAGGAGTGAAGACCGTGCCTCAGAGCGACGATACCCCCTTGGAGTTAATCACCTCATCCAGAGCCCAATGGGCGCTAACAAgGTGTGCAAGCTGGCCAGAGAGTAAAAATCCAATTGTGAAAGAAAATGCCTTGCTGATGATTAGGTTTCCGTACACAGAACATACTATACGTACTGAGAAACAAGGAAAGAAAAACGACATGGACAACGAGTCCGCCTTCACGTTCTCTGGCAACTGGGTGGGTCGCTGTGATACTTGCTGCAGCAGCGACGATCAGTGGCTTGCTTACATCGACATGGAGACACATGCAGCCCCGCACCGCCGCCTTTGGATGGGTCCCCAGTTCTCGTTCAAGACCTTCCAACCGCCTGGATCTTCCTCCGCTTCGTCCACACACAGCCTGGGGGACTCCAGGACTGGGAGTTCGGGCAGTGGAGCCACAATTGCAGCTTACCGCGAGGGGCACCCGATGGACTTCTACACCGAGGAACTCGACCTGCAGAGCTTGAGGCTGCAGCCGGTGCGCTCCGACCCAGTTCCCACTCCAGCTGCTCGATTCGCCTTCACCGGGTGCGTGTCACCCAATCTGGGTGGTAGCATGCCTTTGATAGTTGATAACGGCCCGGGAAGTTTGACAGATCCCTGGCCAAACCACGACATGTTTGAAGACAAGGAAGAACAGCTCGTTGAGACGCTGGCGGACGCTATGAACGACAATGCCACTGCACCAGTGAAAAGCGGCAAGAAAAGGACAACTTCGATTAACGGAGAGAACCAGTTTCAGTTTCAGTCGGATACGTTGGGGGGAGGAGTGAATGCGTTTGCCTCGTATTCTCCCTTAGAGACGAACCCGCTCTTTCCACCCGACTGGTCCTGAGTGCTTTTTAGCCGGATGAGCCACTGTGTGATGTATGGAATTCTTACCGAGTTAAATCACTCGTCCATGCTGGGTAAAGTAAAAAGAATGTAAttccaaagaaagaaaactaaagagTTTTAAGGTATCAGAAATCTTGGAAATATAATTTTGAGCTAATATGGTATCTTAAGCAAAAGTTTAACAGTGATTTAAAATCGCAAAACTTGTAGCAGATCTTTAATGTCGGATCTTTTTCTCCTTCACTTTTTATGAGATTCTGATGAAAGGCAAGTAGATATTTCATTCAGAATTATCCATTAAATCTC

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008907 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12490 all species →	BCAS3	BCAS3 microtubule associated cell migration factor, C-terminal	Domain	Interproscan
PF21034 all species →	BCAS3_WD40	BCAS3, WD40 repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR022175 all species →	Domain	BCAS3 domain	Interproscan
IPR045142 all species →	Family	BCAS3-like	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR048382 all species →	Domain	BCAS3, WD40 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13268 all species →	BREAST CARCINOMA AMPLIFIED SEQUENCE 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006914 all species →	Biological Process	autophagy	Interproscan
GO:0042594 all species →	Biological Process	response to starvation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24550	BCAS3; breast carcinoma-amplified sequence 3	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.