Gene detail

Detailed information of ENSJQFP00000018186.1 in Rhodactis osculifera

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species abbreviation ROSCU · all data for this species · gene families

Sequence

CDS

Transcript

ENSJQFT00000018874

GGGATTGGCAACTACAGGCAATTGTTTCTTGTGCATTTTATTTAGTTTTTTGCTGATCTGCTTTACTTCAAGGAAATTATTCTTTTTCAGAGTGAACCAAAGAAATGCACCCTTAATCTTTCGgtgattcttatcaatgaaataaaattagctTTCCATGATAAGCTGGGCTAGAAACTATCTACAATGGTGAACAGCAAAAAAAGAACTGCCCAAACTTAAGTTATTGATTGGAGCACACAAATCATTATTCAGAAAACGTAATCTGAGATCATGGCTGCCAGAATTTCTGAATGAAAGGGCTTGCTCAGCTTGGGGGACATTCAGTTTTTCTTACTGATACTGACTTCCACCTTGgagtcaatgaatcaatcaaagacACTGGAAGGGTGTTATCTGGATTTTGTGATTTTATCCTGCTCCGTGCCAACAGACAGAAAGATTTGGAGGTTTTGGCAGAAAGTGCGTCAAGTCCTGTTATCAATGGTTTGACAGATGTTTATCACCCATTACAGATCCTTGCAGACCTCTTGACTTTGCAGGAGCATTTTGGTTGTCTTCATGGAAGTACCATTGCATGGGTTGGTGATGGCAACAATGTTGTTAATTCATTCATGATGGCAGCACCGAAATTTGGAATTCATTTGAACATTGCAACACCAAAGGGTTATGAATCAAATAGTGAAGTTATCAAGATTGCAAGAGGCCTTGCACAAAAGTATGACACATCTCTAAATTTGACAAATGACCCGAGAGAAGCATGCTTAAAAGCTGATGTAGTTGTTACTGATACATGGATCAGCTTGGGGCAGGAGGAAGAGAAGGCGTCCAGGTTAAAGTCTTTTGAAGGTTATCAGATTAATAACAAGCTGATGTCTTTAGCTAAAGAGGAAGCTGTATTCCTTCACTGTCTTCCAAGGAAGTCTGAGGAGGTCTCGGATGAAGTTTTCTACTCTACCAGATCTCTGGTGTGGCAAGAAGCAGAGAACAGAAAGTGGACTGTCATGGCAGTGATGGTTTGTTTACTGGAGGACTATACACCAACATTTCCTATGCCTCAGTTTTAATAACTTGTATccaattaaaaatgaaaattatgTCAAGATCATAACTATTAGATAGCACACTAACTTTGCAAAAATAAGAGACAGTTCATTTGAATGCATGATCCAAGTGGAATAACTGGTAGGAAGGAGAAAACTTAATTTAGAATTTTACCATTGATctaatgaaagattaaaatggaaaaaaataaaattagtttgttttgtgatccacGACCTCAAGATATCagttcattattgttattacattaACAGATCTCGATATATTTCTACTGTGTTGAAGTTGATAAAGTAGTACAGGTAATGCAGTGGTTAagtgcttgcctcccacctgcgtaagcatctcatgtgggttgagttttttgttggttctctccctccAAGATTTTTTTCTGGGTTCTACAACTTTCCTTCCTTCACAGAAACCAacatttcaaattccaattcgatctgaagCTGACCTGATCACTGTTGACaattctgatcactgttgacACTTAAATGGTCAACACTGTGATTTCAAAAAACAGGAACAAAAAAGACATTATATAATATGCTCATTACAGTTCTTAGTCTTGATTCCAAGGGAAAAAAATTTCTGTAGCAACTTTGCACCTGCCTTTAGTTAAGGCCGTTATAGTCTTCACTTCCATCATGGTTCATCGTTACCTCTTCCTCTGTTCCTTGGTATTCTCCAGGGCTCAAAGTATGATACCAGTTTGCCTTCTTTTGAGGGAAGAATACCTTTCATTTTTTTACCAAACTCATTTGCCTAAAAGTAAAGCAAAGAGTTGCTTTTGTGAAGAAACTGAGTTTAAAGAATGGTTGGAGAAAAGACACCAGTGGTATAGCCACTTTTTCAACTTGTAGGCATGGTTCCTAAATGGTACAAAATTTATTTCACAAAGGCCCTCACAAAATCAACAGGTTGGAAAAATTAATC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00185 all species →	OTCace	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain	Domain	Interproscan
PF02729 all species →	OTCace_N	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036901 all species →	Homologous_superfamily	Aspartate/ornithine carbamoyltransferase superfamily	Interproscan
IPR006131 all species →	Domain	Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain	Interproscan
IPR006132 all species →	Domain	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding	Interproscan
IPR006130 all species →	Family	Aspartate/ornithine carbamoyltransferase	Interproscan
IPR002292 all species →	Family	Ornithine/putrescine carbamoyltransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45753 all species →	ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006520 all species →	Biological Process	amino acid metabolic process	Interproscan
GO:0016597 all species →	Molecular Function	amino acid binding	Interproscan
GO:0016743 all species →	Molecular Function	carboxyl- or carbamoyltransferase activity	Interproscan
GO:0004585 all species →	Molecular Function	ornithine carbamoyltransferase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0019240 all species →	Biological Process	citrulline biosynthetic process	Interproscan
GO:0042450 all species →	Biological Process	arginine biosynthetic process via ornithine	Interproscan
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00611	OTC, argF, argI; ornithine carbamoyltransferase	EC:2.1.3.3	Arginine biosynthesis	ko00220	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.