Gene detail

Detailed information of ENSJQFP00000018604.1 in Rhodactis osculifera

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Rhodactis osculifera · all data for this species · gene families

Sequence

CDS

Transcript

ENSJQFT00000019293

GTCGATCCTTTGGCGCGTGGAGTAAATAAACTAAGAAGAGTTTTAACAGTATCATTGGGAGTCAGTCATATCACGATGTTTGGATTTGATATGCAAATGTTTGGTGCTGTGCCGAGGACATTCAAGACTCAGTTTCGTTGTTATTCAGTAGTTATGTTTCCAGGGAACGAGCGTGAAGATGTAGAAAGAGGTGGTAAAATAATAATGCCTCCTTCAGCTTTGGACCAACTAAcAAGACTCAACATCGTTTACCCAATGCTATTCCAGCTATCTAATACTAGGTCTGGTAGAAAAACACATTGTGGAGTGCTGGAATTTGTTGCTGATGAGGGAAAGATGTACCTTCCTTACTGGATGATGCGCAATCTTTTGCTGGAGGAAGGAGGACTTTTGCAAGTTGAAAGTGCATCTTTGCCTATTGCATCTTACGCAAAGTTCCAGCCCCAATCAGTTGACTTCCTGGACATAACAAACCCAAAAGCAGTTTTAGAGAATGCACTCAGGTCATTTGCATGTTTGACTAAAGGAGACATCATTGCAATCAAGTACAATGAGAGGATTTATGAATTGTTAGTGCTGGAGACTAAACCTGGAAAAGCTGTGTCTATCATTGAGTGTGATATGCAGGTCGAGTTTGCACCTCCTATAGGATACGTCGAACCAGAAAGACAAGAGAAGAAACAGGAGAAAAAGGAAGAAGGGCAGGCAGATACGCCGCACGGGATTGTGGATCACGGATTTCAGGCGTTCTCTGGTTCTGGATTTCGCTTGGatgggaagaagaagaagtcaaTTGTACCCTCGGATCCAGTTCCAATTGGTCCTCCAGTTATCAAGAGGGGAATTCCTAACTACAATTTCGAGAAAGGAAAGATCACTTTTAAGAGGAACTTAAACAAATCCAATGTGTCACAGTCTAGCAACAAAGGAGAGTCTAATACGTCCGAGTTCGAAGCGTTCTCCGGAAAAGGGAAGACTCTACGACCGAAAAGAAAGAACTAATGGGATAGGATACAAGCAGGCAGGACCGCCCAACGTTGAGGCTACAATGATGCTCTGCACCTTTATGGCTTTGTCCTACTTTTCCCGTTTTAAACGCGCCACGCATTGGGAAAAGACGTTCACATTTGTTACACGTTAAATGAAGGTTTGTCACGCAATGGCTATCCTGGCCGTTGCGTGACGGCTCAAAACTGAAGCAGTGAAAGGTTACCGTGACGTCATCTTTGAGTTTCAAGTAGACGCCAGATTCAACTGGCCCTTAAAAGAAACAGACACGAGGAAAGGCTGTCAGCTCGTGTTCTTCTTTGAAGAATTTGGCTCCTTGTATTCAATCCTCACGCCGgagttttgtaaaatttatcgcAATACATCACTGATTGATAAACGTGAATGATCGCTGTGATTTTTGTAAGTTACATCTTTCTTTGTAACTGCATTCTACTGCAGGTCATCAAAACTAATTGGAAAGCCGCTCTTTTTCGTACCAAACAGACATTCCTTGTATTTCAACTCCCCTAAAAGATGTCTTAACATACGAGAGCTTTGGTTGTGTATGTTTGCCATATAAATGGCAGAAATGATTTCTCAACTGTGTTTATTACAGTTGAATAACCTAACCCTTAAGTTCCTTCTCATGGGAACATGGACCGAAGTAAAAATCCCAATCTTACAATGATAGTTCGTCACGGGTGATACATGGCCCCCCCACCCGAGATATGGCCGAGACATTCAGTTGGAGCCCAGAGTGGTCAACAAGAAATAAGGTGCGACTAAATTTTATTAAACTAAATAGCATTTGATACGTTGTAATCTCtcagtgattaaaaaaaaactcgatCTAAGGACCGACCATTTAGTAGAAATCTGCTGTCAAAATTCAGCGATGCGCTATGAAACAATATCTCGATTTACTTTGTGTTCATTAGGAACAGGGTTTTGTATCACAGACGCTCTGTTAGATGTTCTAACTTAACAAACTTAGTCTTACAGTGTAAATTA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03152 all species →	UFD1	Ubiquitin fusion degradation protein UFD1	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004854 all species →	Family	Ubiquitin fusion degradation protein Ufd1-like	Interproscan
IPR042299 all species →	Homologous_superfamily	Ufd1-like, Nn domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12555 all species →	UBIQUITIN FUSION DEGRADATON PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0030433 all species →	Biological Process	obsolete ubiquitin-dependent ERAD pathway	Interproscan
GO:0031593 all species →	Molecular Function	polyubiquitin modification-dependent protein binding	Interproscan
GO:0034098 all species →	Cellular Component	VCP-NPL4-UFD1 AAA ATPase complex	Interproscan
GO:0071712 all species →	Biological Process	obsolete ER-associated misfolded protein catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14016	UFD1; ubiquitin fusion degradation protein 1	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.