Gene detail

Detailed information of ENSJQFP00000019447.1 in Rhodactis osculifera

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species abbreviation ROSCU · all data for this species · gene families

Sequence

CDS

ENSJQFT00000020148

ATGTGCGAGAGGACGGAGGAAATGGAAGGAAGAACGACTTCTCAAAAGGTAGTTCTTTCTCAAAATGGAAAGGAGACAGTTCCTAGAGGTAAAGGGCAGTGGAGAGGAAGAGGCAGAAGAGGGCAAAATCATTATGGAAGGCCTACAAATTCAGAATATCACAGACAACAACCAAGTGATCGCAGAGATGGATACAATCAACCTCAGCGGTGGGCAACTATGCCGCAGAAGAGACCCCAGACAAGAGGTCTTTATCAAGGCAGAAGAGACCTTAGTAAGGAGGTGGAATCTGGAATCCCTGTGACTACATCTAGCTCAGGCTCCAAGAAATATGGATCATCACTTAATCACCTGTTAAACTTCCATTATATCCCAAGAGAAAAGTCAGTTGGATATCAGTTGAGGACTAACAGAAAATCGTATACTCCTTTCAACAAGGAACAGTTCATCCAAGCCAATTTTCAGTTTGTAGTGTGTGACTCTGGCGATTATACTGTTCACATCGTGGATCCTGATGTCTTGGTGGACTGGACTTTAATTGAACAAGTGCGTATCTACAGTCATGAGATGCCCTCTTGTCCTATCTGTCTATACCCTCCGGTTGCAGCCAAGATAACACGCTGTGGGCACATTTACTGCTGGTCGTGTATGCTTCATTACTTAAGTCTGACTGATAAGTCGTGGCACAAGTGTCCAATCTGTTACGAGGCTGTACATAAGAAGGATTTAAAGAGTGTGGTTACAATGGAGTCCCACCCATTTGCAGTTGGTGAAACTATCACAATGAGGTTGATGAAAAGAGCTAAGAATTCTGTGCTGGCTATTCCCAAAGAGCAGTGGCGTGACAGGGAATTAAAGCCTTTTACAGTTAATGATAAAATGGACACTCGGTGTGGAAAATTATTGCTTGCTTCCTCAGAAGATGTTCTAAGACAGATTGTTTTTCCAGAGAAAACAGCTCTTGAAACACAGCTTATGGAAGCCAAAAGTGAACAGTCTGGAGAGGTCTGTTACATTGAAGCAGCAATACAAGAAATTAAGGAACGCCATGATAGTTTAAGTGATACCAAAGCCTTTGCAGAAGAAGCAaaaacacttgtgaaaaATGTGTTAGATGATCAAGAGAAGGGAGCCGACAAATGTTGTGGAGTTACCACTTGGAAAGTTCTGTCTCCAAATGCAATTCAGGATGTTAATGAATATGAAGCTGCTTTTTCTGATGAGGaagataaaacaataaaaccaatagATGCATTGGATAATGTACCTGGATCTGTTTCGGAAGAAAGCAATTTGGTGTTTAGTCCAGAAGAAAGCAATGTCACAGTGGATGGCTTCTGTGGTGGCTGTAACAGTGAGAGTACACAAGAGGGGACCAGTGAGAATAACTCGGGTGATTCTAGTTCTGAATCATCTAGGCCTCTATCCCCACTTCCTTTGCCAGCTCAGTACTACTATTTTTATCAAGCGGATGATGGTCAGAACATATTCCTGAGTTCCATCAATGCACGCTGCTTGGCCAAGGAGTATGGAAGTCTTGCAAACTGTCCAGATTATGTGACAGGACAGATTGTGGAAATGGAGGCCATGTCCCAAAGTGAAGGACTTAGAAAACGCTACCGTTACCTTAGCCATCTTCCTCTGACCTGTGAGTTTGTAATCTGTGAGCTGGACCTGAAACCTCCAGCAGTGTCACGGGCCACGTTAGATTTTTATCGAGAAGAACTGCAGCATCGAAAACAACAGCGGCAGAGGAAGATGAGGATGGAAAAGAAGAGAGAGCAGAAGCTGATTGCCAGCGGAACTTCTGGTAGTTCCGGTCGGTCTTCTGGTAATTCCGGACGGTCTTCTGGGCGTGGATTTGTGGGAGAGAAACTGGACCTAGCTAGTGAAGTGGAGTTTCCTGCTCAGTCGGGTGGACAACTGGCTTTGTCCCCGCCCCATAGCGGCGCTACTACACCCAGCCCGTTCATGCAGTTCGCTGCTTCCCTTGCCGCCTACCAAGaTGAAGGTAATGAAGCCCCTGTGGATTCAGAGCGAGCAAATCAATATGCGGAAAACCTGAGTGCTTCCCCGCCGTCCTTTGCCGAGGCATTGCGATCAAGCAAGGGGATTGACATCCCTCAGCGTGTGGAAACCAGGCCCAGAGAAACAGTGCAAGTAGAAAAACTTGGTCCCGGTGAAGAAGACGAGAACGACGATGACTGTGTACCAGTGCCAACGTTTCAGTCGGCCTTTTCGGACGCGTTGGTTGCGGCAGACTGGACTAAACGTGAGGTGCATGCACAAGGAGCTTCACTGGAACAAAGCGGTggaaagaaacagaagaaaacaaaaaagaaacttcTATTCACCACTGGAAGTTTCATGAAGTACACTTGA

Transcript

ENSJQFT00000020148

TATCCCAGTGCCAAGTCCCTGCAAGGGGCAGGAATAATTGCTTTACAAGGGAGTTGACGTTCCCTTGTTCTTTTTGTTGAACTTTCACCTTTAAAGCACTCAAGCACTCAAGCACTAGCGCAGCAAACGAAAGAACATCGTTTTTTAGCGTCCCAGTGATATCATTATGGCTTTGTGAAAATTGTGCGCCATGTGTATGCAAGAAATAGTACAACTAATCTTTTCTCCCTGTGGGGTGACCTCAGTTTCCACTTCAGTTTGTACGTCAGAAATTCATAGAACAGTGATTTGGGCGGTGAATGTGCGAGAGGACGGAGGAAATGGAAGGAAGAACGACTTCTCAAAAGGTAGTTCTTTCTCAAAATGGAAAGGAGACAGTTCCTAGAGGTAAAGGGCAGTGGAGAGGAAGAGGCAGAAGAGGGCAAAATCATTATGGAAGGCCTACAAATTCAGAATATCACAGACAACAACCAAGTGATCGCAGAGATGGATACAATCAACCTCAGCGGTGGGCAACTATGCCGCAGAAGAGACCCCAGACAAGAGGTCTTTATCAAGGCAGAAGAGACCTTAGTAAGGAGGTGGAATCTGGAATCCCTGTGACTACATCTAGCTCAGGCTCCAAGAAATATGGATCATCACTTAATCACCTGTTAAACTTCCATTATATCCCAAGAGAAAAGTCAGTTGGATATCAGTTGAGGACTAACAGAAAATCGTATACTCCTTTCAACAAGGAACAGTTCATCCAAGCCAATTTTCAGTTTGTAGTGTGTGACTCTGGCGATTATACTGTTCACATCGTGGATCCTGATGTCTTGGTGGACTGGACTTTAATTGAACAAGTGCGTATCTACAGTCATGAGATGCCCTCTTGTCCTATCTGTCTATACCCTCCGGTTGCAGCCAAGATAACACGCTGTGGGCACATTTACTGCTGGTCGTGTATGCTTCATTACTTAAGTCTGACTGATAAGTCGTGGCACAAGTGTCCAATCTGTTACGAGGCTGTACATAAGAAGGATTTAAAGAGTGTGGTTACAATGGAGTCCCACCCATTTGCAGTTGGTGAAACTATCACAATGAGGTTGATGAAAAGAGCTAAGAATTCTGTGCTGGCTATTCCCAAAGAGCAGTGGCGTGACAGGGAATTAAAGCCTTTTACAGTTAATGATAAAATGGACACTCGGTGTGGAAAATTATTGCTTGCTTCCTCAGAAGATGTTCTAAGACAGATTGTTTTTCCAGAGAAAACAGCTCTTGAAACACAGCTTATGGAAGCCAAAAGTGAACAGTCTGGAGAGGTCTGTTACATTGAAGCAGCAATACAAGAAATTAAGGAACGCCATGATAGTTTAAGTGATACCAAAGCCTTTGCAGAAGAAGCAaaaacacttgtgaaaaATGTGTTAGATGATCAAGAGAAGGGAGCCGACAAATGTTGTGGAGTTACCACTTGGAAAGTTCTGTCTCCAAATGCAATTCAGGATGTTAATGAATATGAAGCTGCTTTTTCTGATGAGGaagataaaacaataaaaccaatagATGCATTGGATAATGTACCTGGATCTGTTTCGGAAGAAAGCAATTTGGTGTTTAGTCCAGAAGAAAGCAATGTCACAGTGGATGGCTTCTGTGGTGGCTGTAACAGTGAGAGTACACAAGAGGGGACCAGTGAGAATAACTCGGGTGATTCTAGTTCTGAATCATCTAGGCCTCTATCCCCACTTCCTTTGCCAGCTCAGTACTACTATTTTTATCAAGCGGATGATGGTCAGAACATATTCCTGAGTTCCATCAATGCACGCTGCTTGGCCAAGGAGTATGGAAGTCTTGCAAACTGTCCAGATTATGTGACAGGACAGATTGTGGAAATGGAGGCCATGTCCCAAAGTGAAGGACTTAGAAAACGCTACCGTTACCTTAGCCATCTTCCTCTGACCTGTGAGTTTGTAATCTGTGAGCTGGACCTGAAACCTCCAGCAGTGTCACGGGCCACGTTAGATTTTTATCGAGAAGAACTGCAGCATCGAAAACAACAGCGGCAGAGGAAGATGAGGATGGAAAAGAAGAGAGAGCAGAAGCTGATTGCCAGCGGAACTTCTGGTAGTTCCGGTCGGTCTTCTGGTAATTCCGGACGGTCTTCTGGGCGTGGATTTGTGGGAGAGAAACTGGACCTAGCTAGTGAAGTGGAGTTTCCTGCTCAGTCGGGTGGACAACTGGCTTTGTCCCCGCCCCATAGCGGCGCTACTACACCCAGCCCGTTCATGCAGTTCGCTGCTTCCCTTGCCGCCTACCAAGaTGAAGGTAATGAAGCCCCTGTGGATTCAGAGCGAGCAAATCAATATGCGGAAAACCTGAGTGCTTCCCCGCCGTCCTTTGCCGAGGCATTGCGATCAAGCAAGGGGATTGACATCCCTCAGCGTGTGGAAACCAGGCCCAGAGAAACAGTGCAAGTAGAAAAACTTGGTCCCGGTGAAGAAGACGAGAACGACGATGACTGTGTACCAGTGCCAACGTTTCAGTCGGCCTTTTCGGACGCGTTGGTTGCGGCAGACTGGACTAAACGTGAGGTGCATGCACAAGGAGCTTCACTGGAACAAAGCGGTggaaagaaacagaagaaaacaaaaaagaaacttcTATTCACCACTGGAAGTTTCATGAAGTACACTTGAAACTGGGGCAAGTTAACTGTTGGCAGTAATCGCCATTTCAAAGATGTGTCGTCGCAAGGAATTTCTTTTGGTTGCGCAAAATAAATCTGCCACCTGTCCTTGATGTTTTACACGTATTTAATTTTGGTGTAAGTTGCCCAATAAAAAGTTTGATTGACA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00097 all species →	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR039739 all species →	Family	RING-finger protein MAG2/RNF10	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR018957 all species →	Domain	Zinc finger, C3HC4 RING-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12983 all species →	RING FINGER 10 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000976 all species →	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26979	RNF10; E3 ubiquitin-protein ligase RNF10	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.