Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Rhodactis osculifera · all data for this species · gene families
| CDS |
| ENSJQFT00000021386 |
| Transcript |
| ENSJQFT00000021386 |
| Protein |
| ENSJQFP00000020603.1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF10283 all species → | zf-CCHH | PBZ domain | Domain | Interproscan |
| PF00645 all species → | zf-PARP | Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region | Domain | Interproscan |
| PF04679 all species → | DNA_ligase_A_C | ATP dependent DNA ligase C terminal region | Family | Interproscan |
| PF01068 all species → | DNA_ligase_A_M | ATP dependent DNA ligase domain | Domain | Interproscan |
| PF04675 all species → | DNA_ligase_A_N | DNA ligase N terminus | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000977 all species → | Family | DNA ligase, ATP-dependent | Interproscan |
| IPR019406 all species → | Domain | Aprataxin and PNK-like factor, PBZ domain | Interproscan |
| IPR050191 all species → | Family | ATP-dependent DNA ligase | Interproscan |
| IPR001510 all species → | Domain | Zinc finger, PARP-type | Interproscan |
| IPR036599 all species → | Homologous_superfamily | DNA ligase, ATP-dependent, N-terminal domain superfamily | Interproscan |
| IPR036957 all species → | Homologous_superfamily | Zinc finger, PARP-type superfamily | Interproscan |
| IPR012309 all species → | Domain | DNA ligase, ATP-dependent, C-terminal | Interproscan |
| IPR012310 all species → | Domain | DNA ligase, ATP-dependent, central | Interproscan |
| IPR016059 all species → | Conserved_site | DNA ligase, ATP-dependent, conserved site | Interproscan |
| IPR012308 all species → | Domain | DNA ligase, ATP-dependent, N-terminal | Interproscan |
| IPR012340 all species → | Homologous_superfamily | Nucleic acid-binding, OB-fold | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45674 all species → | DNA LIGASE 1/3 FAMILY MEMBER | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003910 all species → | Molecular Function | DNA ligase (ATP) activity | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0071897 all species → | Biological Process | DNA biosynthetic process | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0006266 all species → | Biological Process | DNA ligation | Interproscan |
| GO:0006273 all species → | Biological Process | lagging strand elongation | Interproscan |
| GO:0006288 all species → | Biological Process | base-excision repair, DNA ligation | Interproscan |
| GO:0006302 all species → | Biological Process | double-strand break repair | Interproscan |
| GO:0070421 all species → | Cellular Component | DNA ligase III-XRCC1 complex | Interproscan |
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| GO:0006281 all species → | Biological Process | DNA repair | Interproscan |
| GO:0006310 all species → | Biological Process | DNA recombination | Interproscan |
| GO:0003909 all species → | Molecular Function | DNA ligase activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K10776 | LIG3; DNA ligase 3 | EC:6.5.1.1 | DNA repair and recombination proteins | ko03400 | deepkoala |
