Gene detail

Detailed information of ENSJQFP00000021469.1 in Rhodactis osculifera

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species abbreviation ROSCU · all data for this species · gene families

Sequence

CDS

ENSJQFT00000022297

atgattgatgtggcAAAAATTGCAGATCTGGTTCTTCTTCTAATTGATGCCAGTTTTGGTTTTGAAATGGAAATCTTTGAATTTCTAAACATTTGTCAGGTTCATGGCTTTCCTAAAATCATGGGAGTGTTAACTCACCTTGATTTGTTGAAGAACAACAAAACACTTAAAAAGACTAAAAAGAAACTGAAGAGTAGATTTTGGACAGAAGTTTACCAGGGAGCAAAGCTCTTTTACCTCTCAGGTTTAGTGTATGGTTCTTATCCTAAAGTTGAAGTCCATAACCTTGGAAGATTCATCTCTGTGACAAAGTTTCGCCCCATCTCTTGGCGTTCTTCTCATCCCTACATATTGGCTGATAGGATGGAAGAGCTCACAGATCCTGAGATAATTCGTAAGAACCCCAAGTGCGACAGGAAGGTGTCACTTTATGGATACGTCAGAGGAACATATTTGAAACACAATTCCAGAGTTCATATAATTGGCTGTGGGGACCACAAACTTGAAGACATCAGTCTACTGCCAGATCCTTGCCCTTTGCCAAATGCAGAAAAGAAACGTTCTCTGAATGAGAAGGAGAGGTTGATTTATGCTCCGTTATCTGGGATGGGAGGAGTAGTTTATGACAAGGATGCTGTTTACATTGACCTTGGAGGAAGTCGGGCTGCTAAGGAATTATCACACCCAGCTCATGTTGTTGTGAGACCAGGAAATGAATTGGTGACTTCCCTAATTGATGCAAAGCACACAATTGACAGCAAAATGTCTGCAAGTCACCTCACTTTGTTCAAGGATGGCATCATTATATCCCCTGATAAAGTTATTGAGAATCAAGACACCACTCATCCCAATGAAAAAACAACACTAAACAACGATAGTGTGGTTCGACGAAAGGCATTTTTTTACAATGACAGTGGATCAGAAGGACAAGATGATGATGCTTATGACAATGACAGCaaaagtgatgatgatgatgataatgatgatgatgataatgatgatgatgatgatgatgttaatgatgatgatgatgatgatgttaatgatgatgatgatgatgatgttaatgatgatgatggtgatgatggtgatgatgatgatgatggtgatgttggTGATCATGATGATGAGGAAGAAGATATTACAGacattgaagaagaagaagatataAATGATGAAATAACTTTCAACTTCAAAAACTGTAATCCGCAGCTCAAGAAAGGTATGAAGCGTAAATTGGTAAAGTCATCTCGCCACACAGGGGTGGACAAGGCGAAAAATGAGCGGAATCTTACAGAGAGTAATTCTGAAGAAGACGACGAGAGAGATGAAAGTCAAGGTGGCATCAAAGTTGAAGGGAATGAAATCAGAAATGGAAATTTGGCAGAGGAGTCAGCATCAGATACAGAATCCGAAGCAGGTTTTCCGAAAGTCAAAAGGAGAAAGTTAGATCACTGTAGTGAAGAAGCCGCTGGTGGAGAGAGAGTGAAGTCTTGCAAGAAAGGGATAGGCGATAACCAACGTGTTAAAAAGGCTTCTTCGTCAACTGAGAAAACTGGAAAACCTGAGACAAAAAACAGGATTAAAGAGACTCTGTCAGAAACAAACATGGATCCCTCTATAGAGAGAACatgtaaaaaattaaaaagaaagcgTTGCAATGAAAAGAATTTTCCGCCTAACGGTGAGGATAGTACGGGAAATATAGAGGACATAGAGAAAACTGAATCCAGAGATACAAGTCCAGTGCATACAAACACAGAGAAAGAAGGTAGTTTGAGGTGGAAAGAAAACTTGGCACAGAAGGCAGCGGAGGCATTCTTACGACAGCAGCAACAGACACCAAATTTACGGAAACTAGTTTATGGAAATGTGATTCATGACGCCAAGCAAGAAACTGCTGAGAAAAGTGTGGAAGACGAACCTTTAGCAGGGTTATTTGTAGTAATGCCCAGAAAGAGTTCAGTCCAGTCAGCTACCATTGACGAGAAAGACTGCTCGTTGGAGCTCGTGAATAAACCGCTAAGGGACTGGTCACAACCGGAAGTGCTTCAAAGCATCCGGGACTGTTTTGTAACCGGAAAATGGAAAGATTCAGAAGATGCTGAGAAACTTCTTCAAATGGATGATCAAATGTCAGATGAAAGCGTTTTTGGGGACTTTGAAGACTTGGAGACGGGAGAAGTGCATAGAGCTGCTGACAATGAAAACtccgaggaggaggaggaagaggaggaagagttGAGTCACAATGATCAAGGGTCAGCTGACATGGTggagaagaaaaagagaaagaaagctgCCTTTGATGCCATATACGATGAAGGAGATGATACCAATTACTACCAGGATCTCAAAGCACAAATGACGGAACAGGCACAGCTGAACCAAACAGAGTTTCAGGACTTGGATGACGAAACACGCGCGCAGTACGAAGGATTCAGGCCAGGATTGTATGTCAGGGTCGAGCTAAGTGCAATGCCCTGTGAATTTGTGACTCATTTTGATGCTAGGTATCCCGTCATCCTCGGCGGCCTTCTCTCCAGTGAAGATACAATGGGATTCTTACAGGTGCGCTTCAAGAAGCATCGTTGGCACAAGCGCATACTCAAGACACGGGATCCGCTGATTATGTCTGTTGGCTGGCGCAGGTTTCAAACGCTTCCCATGTACTCTGTCCAAGACCACAACGGCCGACACAGGCTGCTAAAGTACACTCCGGAACACTTGCATTGCATGGCCACTTTGTTCGGCCCCATAACCCCGCCCGGCACAGGGACGCTCGCCATTCAGGCTACAGCCGGCAACATGGCAGACTTCCGTATATCAGCCACCGGCACCATATTAGACTTGGACAAGTCGGTGCAATTGGTCAAGAAATTGAAACTGACCGGAACACCGATGAAGATTTTCAAAAATACGGCATTTATTAAGGGAATGTTCAACTCTGCCCTTGAAGTGGCTAAATTCGAAGGGGCTACAATCCGAACGGTCAGCGGTATCAGGGGTCAAGTTAAGCGCGCGTTGAAGACGCCAGAGGGAACCTTCCGTGCTACGTTTGAAGATAAGATTCTGATAAGTGACATAGTTTTCATGAGAACGTGGTATCCAGTAAGGGTACCTAACTTCTACAACCCTGTGACGTCACTTTTGCTCGCACCTGACCAGAAGGAGAAGTGGCAAGGCATGCGCACTGTGAGTCAGTTGAGACGAGATCTGGGTCTAAAAGCTCCCGTCAACCATGATTCACTATACAAGCCCGTGGAGCGGGAGACTCGTCGTTTCAATCCTTTGGTGATACCAGCCAAACTTCAAAAAGAGCTGCCGTTCAAATCCAAACCCAAACTGATGAAAAAGAGGACGAAACCATCTCTGGAAAGCAAGAGAGCTGTTGTCATGGAACCGCACGAGAAATCGGCGTACACCCTCATGCAACAACTGAACACGGCAAATAAGGAGAAACAGCGAAAGCGAAAGGAGAAACTTGAGGAACGAAGGAAAGAACACCGCGCAgaggaggaaaagaaaaaccgaAAACGACAGCAAAGGCAGCGAGAGGAGAGAAAAAAGATCTTCCGAATGATAGGACAGGCCGAGAAACgcagaaaaaaaacatga

Transcript

ENSJQFT00000022297

GCCGTTCGGGCGGCTCGACAATTTCGCCGGAAACAAGACGTGGAAACAAAAAGACATCATGAACCACTCGTAGATCGTACACCGTTAGAGCCTCCACCATATATTGTTGCAGTTGTTGGACCACCTAAAGTTGGCAAGACGACACTTATCAGTTCACTATTGAAGAATTTTACCCGTCAACAGTTGTCTGATGTTAGAGGTCCCGTCACAATAGTTTCAGGGAAAAAAAGACGTCTTACCTTACTTGAATGTAACAATGACatcaattcaatgattgatgtggcAAAAATTGCAGATCTGGTTCTTCTTCTAATTGATGCCAGTTTTGGTTTTGAAATGGAAATCTTTGAATTTCTAAACATTTGTCAGGTTCATGGCTTTCCTAAAATCATGGGAGTGTTAACTCACCTTGATTTGTTGAAGAACAACAAAACACTTAAAAAGACTAAAAAGAAACTGAAGAGTAGATTTTGGACAGAAGTTTACCAGGGAGCAAAGCTCTTTTACCTCTCAGGTTTAGTGTATGGTTCTTATCCTAAAGTTGAAGTCCATAACCTTGGAAGATTCATCTCTGTGACAAAGTTTCGCCCCATCTCTTGGCGTTCTTCTCATCCCTACATATTGGCTGATAGGATGGAAGAGCTCACAGATCCTGAGATAATTCGTAAGAACCCCAAGTGCGACAGGAAGGTGTCACTTTATGGATACGTCAGAGGAACATATTTGAAACACAATTCCAGAGTTCATATAATTGGCTGTGGGGACCACAAACTTGAAGACATCAGTCTACTGCCAGATCCTTGCCCTTTGCCAAATGCAGAAAAGAAACGTTCTCTGAATGAGAAGGAGAGGTTGATTTATGCTCCGTTATCTGGGATGGGAGGAGTAGTTTATGACAAGGATGCTGTTTACATTGACCTTGGAGGAAGTCGGGCTGCTAAGGAATTATCACACCCAGCTCATGTTGTTGTGAGACCAGGAAATGAATTGGTGACTTCCCTAATTGATGCAAAGCACACAATTGACAGCAAAATGTCTGCAAGTCACCTCACTTTGTTCAAGGATGGCATCATTATATCCCCTGATAAAGTTATTGAGAATCAAGACACCACTCATCCCAATGAAAAAACAACACTAAACAACGATAGTGTGGTTCGACGAAAGGCATTTTTTTACAATGACAGTGGATCAGAAGGACAAGATGATGATGCTTATGACAATGACAGCaaaagtgatgatgatgatgataatgatgatgatgataatgatgatgatgatgatgatgttaatgatgatgatgatgatgatgttaatgatgatgatgatgatgatgttaatgatgatgatggtgatgatggtgatgatgatgatgatggtgatgttggTGATCATGATGATGAGGAAGAAGATATTACAGacattgaagaagaagaagatataAATGATGAAATAACTTTCAACTTCAAAAACTGTAATCCGCAGCTCAAGAAAGGTATGAAGCGTAAATTGGTAAAGTCATCTCGCCACACAGGGGTGGACAAGGCGAAAAATGAGCGGAATCTTACAGAGAGTAATTCTGAAGAAGACGACGAGAGAGATGAAAGTCAAGGTGGCATCAAAGTTGAAGGGAATGAAATCAGAAATGGAAATTTGGCAGAGGAGTCAGCATCAGATACAGAATCCGAAGCAGGTTTTCCGAAAGTCAAAAGGAGAAAGTTAGATCACTGTAGTGAAGAAGCCGCTGGTGGAGAGAGAGTGAAGTCTTGCAAGAAAGGGATAGGCGATAACCAACGTGTTAAAAAGGCTTCTTCGTCAACTGAGAAAACTGGAAAACCTGAGACAAAAAACAGGATTAAAGAGACTCTGTCAGAAACAAACATGGATCCCTCTATAGAGAGAACatgtaaaaaattaaaaagaaagcgTTGCAATGAAAAGAATTTTCCGCCTAACGGTGAGGATAGTACGGGAAATATAGAGGACATAGAGAAAACTGAATCCAGAGATACAAGTCCAGTGCATACAAACACAGAGAAAGAAGGTAGTTTGAGGTGGAAAGAAAACTTGGCACAGAAGGCAGCGGAGGCATTCTTACGACAGCAGCAACAGACACCAAATTTACGGAAACTAGTTTATGGAAATGTGATTCATGACGCCAAGCAAGAAACTGCTGAGAAAAGTGTGGAAGACGAACCTTTAGCAGGGTTATTTGTAGTAATGCCCAGAAAGAGTTCAGTCCAGTCAGCTACCATTGACGAGAAAGACTGCTCGTTGGAGCTCGTGAATAAACCGCTAAGGGACTGGTCACAACCGGAAGTGCTTCAAAGCATCCGGGACTGTTTTGTAACCGGAAAATGGAAAGATTCAGAAGATGCTGAGAAACTTCTTCAAATGGATGATCAAATGTCAGATGAAAGCGTTTTTGGGGACTTTGAAGACTTGGAGACGGGAGAAGTGCATAGAGCTGCTGACAATGAAAACtccgaggaggaggaggaagaggaggaagagttGAGTCACAATGATCAAGGGTCAGCTGACATGGTggagaagaaaaagagaaagaaagctgCCTTTGATGCCATATACGATGAAGGAGATGATACCAATTACTACCAGGATCTCAAAGCACAAATGACGGAACAGGCACAGCTGAACCAAACAGAGTTTCAGGACTTGGATGACGAAACACGCGCGCAGTACGAAGGATTCAGGCCAGGATTGTATGTCAGGGTCGAGCTAAGTGCAATGCCCTGTGAATTTGTGACTCATTTTGATGCTAGGTATCCCGTCATCCTCGGCGGCCTTCTCTCCAGTGAAGATACAATGGGATTCTTACAGGTGCGCTTCAAGAAGCATCGTTGGCACAAGCGCATACTCAAGACACGGGATCCGCTGATTATGTCTGTTGGCTGGCGCAGGTTTCAAACGCTTCCCATGTACTCTGTCCAAGACCACAACGGCCGACACAGGCTGCTAAAGTACACTCCGGAACACTTGCATTGCATGGCCACTTTGTTCGGCCCCATAACCCCGCCCGGCACAGGGACGCTCGCCATTCAGGCTACAGCCGGCAACATGGCAGACTTCCGTATATCAGCCACCGGCACCATATTAGACTTGGACAAGTCGGTGCAATTGGTCAAGAAATTGAAACTGACCGGAACACCGATGAAGATTTTCAAAAATACGGCATTTATTAAGGGAATGTTCAACTCTGCCCTTGAAGTGGCTAAATTCGAAGGGGCTACAATCCGAACGGTCAGCGGTATCAGGGGTCAAGTTAAGCGCGCGTTGAAGACGCCAGAGGGAACCTTCCGTGCTACGTTTGAAGATAAGATTCTGATAAGTGACATAGTTTTCATGAGAACGTGGTATCCAGTAAGGGTACCTAACTTCTACAACCCTGTGACGTCACTTTTGCTCGCACCTGACCAGAAGGAGAAGTGGCAAGGCATGCGCACTGTGAGTCAGTTGAGACGAGATCTGGGTCTAAAAGCTCCCGTCAACCATGATTCACTATACAAGCCCGTGGAGCGGGAGACTCGTCGTTTCAATCCTTTGGTGATACCAGCCAAACTTCAAAAAGAGCTGCCGTTCAAATCCAAACCCAAACTGATGAAAAAGAGGACGAAACCATCTCTGGAAAGCAAGAGAGCTGTTGTCATGGAACCGCACGAGAAATCGGCGTACACCCTCATGCAACAACTGAACACGGCAAATAAGGAGAAACAGCGAAAGCGAAAGGAGAAACTTGAGGAACGAAGGAAAGAACACCGCGCAgaggaggaaaagaaaaaccgaAAACGACAGCAAAGGCAGCGAGAGGAGAGAAAAAAGATCTTCCGAATGATAGGACAGGCCGAGAAACgcagaaaaaaaacatgaccGTGAAGGACAGAAATCTCGATCGTTTGCATATTATTTGCATATTATGCTTCAAAGGAAGTAACCCCGAAGAGAGTATTTGATTGGTCCCCGTGTTTTCACTCGAAGAACTCTGCCAAGCATATAGCTCGTGATTTCTTTTTATCAAAGACAAATACAGTAACGTGTTGTCATTTCTTATTTCAGATATCTTAATTCATGATGGCAGTGTGAAGAACTTTAATTTAAAGGCGTGTTTAAACGCATACCGTGAAAAACGTAGCAAATGTAGCGGGTCTAAAATCTTGTTGGAAGTCTTTTGCATATTTGAGTGCGCAACACTACGCCCTTCGCGTGtgacaacaacaatttacaACTAATAGGTAGTCATtctagcattttgtcagtttttccAGCCCAACGAAATAGCATTCGAACGGGAATGTGTTAAGTGCGCAACAAATATCGGGTAGTGGCAACCATGTGTTTATATGAAATTATGAATTAGGGGTTTAACGTGTTAAATTTATGCATTTTGTTACAATATGTTTTCTGTTGAAATCCAGTATGACAAATATTAGATAGAGGGCTTGAAAAATATCCAAGTAGAAATTCGTGTGGAAACCTTTGAATTTATAAAGAAAACGTAGAGAACCTTACATTGGCCTTCGTAAGAGCCTTTAtccgcgaaaaaaaaattcaataagtaaaataacataAAACTTTAATTTTAGAATTGCTGATTTTGTCTCTTTTGCCTTCAAAATATGGCCAGAGCAACGAAAAATACTGTCCCTTCATCGAACCAGAGCAAGTGGAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08142 all species →	AARP2CN	AARP2CN (NUC121) domain	Domain	Interproscan
PF04950 all species →	RIBIOP_C	40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012948 all species →	Domain	AARP2CN	Interproscan
IPR039761 all species →	Family	Ribosome biogenesis protein Bms1/Tsr1	Interproscan
IPR007034 all species →	Domain	Ribosome biogenesis protein BMS1/TSR1, C-terminal	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12858 all species →	RIBOSOME BIOGENESIS PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0042254 all species →	Biological Process	ribosome biogenesis	Interproscan
GO:0000462 all species →	Biological Process	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0000479 all species →	Biological Process	endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0030686 all species →	Cellular Component	90S preribosome	Interproscan
GO:0034511 all species →	Molecular Function	U3 snoRNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14569	BMS1; ribosome biogenesis protein BMS1	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.