Gene detail

Detailed information of ENSJQFP00000022028.1 in Rhodactis osculifera

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species abbreviation ROSCU · all data for this species · gene families

Sequence

CDS

Transcript

ENSJQFT00000022886

ACCAATTGAATGCAGCAAGCAACATTTTGGTTGGAATTTTAAGGTCTAAAGACACCTATAACAGGCTGGAGGTGATAAAGACTTGCTTGAAATAACACATGCAGCCTTAAAGACTGCCTGATTGCCATATTGCTGGATGTGTTGGAAGTGAACCGTGATTTTATTTCCCCCGTGTGActtgtgttcaatcatttgCTGTGTGGTTGTATAACTAGCAAAGTTTGGATTATGTGTTATTTACCATGTCTATGAGCAGCGATGAGGTCAATTTTCTAGTTTACAGATATCTTCAAGAGTCAGGATTTCAGCATTCAGCATTTGCTTTTGGAGTAGAAAGTCATATTGATCAGTCAAATATCAATGGATCTGTGGTGCCTCCAGGGGCACTGGTGTCTGTTATCCAAAAGGGAGTACAATATGTTGAAGCAGAGGTAGCATTGAGTGAGgaTGGGACAATACTGGATGAAAATGGTGAACTGGAACAATTGTCTCTTGTCGATGCTGTCCTTCCAGACATCATAGCGACCAGGCACACCCTGTTACACAATAGAGCCCTTAAGCAAGTGGTCGGAGTCAAGCAGGAGTCAAACGCAGATTCCAATCACTGCTCACATGTCAATTCCCTGGGACATGGAGAAATAATGGAAGTGGATGGTACCCCTAATGATGTTGGAAACCAGAAAGCCCTGATTTTAAAAGGACACCAGTCTGAGGTATTTGTTTGCTCTTGGAGCCCAAGTCAAGATCTGTTAGCATCTGGGTCCGGTGATGGAACGGCAAGACTTTGGCCGATAAGTGAATCCAGCGTTTCCTCGCCTGTTGTTTTGCACCATCAGTTTAAAGATGTAGAAAATCACAAGAATGTTGCTAAAGATGTGACATCAATAGAGTGGAATTGCGATGGAACGCTTCTGGCAACAGGTTCCTATGATGGTCAGGCACGAATATGGAGTCCAGAAGGGGAGCTGCTAAAAGCCTTAAATGAGCACAAGAGACCTATATTCTCCATCAGATGGAATAAAAAGGGAAATTACTTACTTAGCGCTGGTGTAGACAAGAGTGCTGTTGTTTGGGACTCAAGTAACTGGGAAGTTAAACAACAGTTTTCATTCCACCAAGAACCTATCTTAGATGTTGACTGGCAAAACAACATCAGTTTTGCCTCCTGTTCCACTGACAAAGTCATCCATGTCTGTAGAGTAGGACTTGAAAAACCTGTGAAATCATTTCAAGGGCACAAtAGCGAAGTGAATGCCATCAAGTGGGACCCATCGGGAACACTACTAGCATCATGCTCGGATGACCTCTCTGCAAAGGTTTGGAGTCTAAAAGCAGACACTTGGTTGTTTGATCTTCAAGGtcacaaaaaagaaatttacACAGTAGCATGGAGTCCAACAGGACCCACTACAGCAAGTCCCAATGCTCCTCTTGTTTTAGCGAGTGCCTCGAATGATACCACAGTCAAACTGTGGGAAGTCGAACGCGGCAGTTGCGTGCTTTCGTTGTCCAAGCACCAAGACCCCGTGTATTCACTCTCCTTCAGTCCTGATGGGAGATACCTCGCCTCGGGCTCCTATGACAGGGCAATAAATGTCTGGTCCACTCAGACTGGCACTTTAGTCcatagtttccacggtagtggTGCAATATTTGAAGTCCAGTGGAGTCCAAGGGGGGACAAAGTTGCCGCCTGTTTTTCAGATAACACGCTGTGCGTTTTAGACGTCCGAAATCTTTGACGTTCTCTCTCATCTTCCTTCAAGATTTCCCACACTCATACAATCAAGATGTTTTCTAACATTCCCCGTAAATATGAACCTTTCTTTCACCCTCCACCCTCGGTAAACATGATTTCCCCAGTAGAGTTTTCTGGCGGAGTGACTTCGTAGAGTTGTTAACTAAATTCTCCAAACTACCGTTACCAAAATCTATTATTATCACTTAGGAGAATGTGTTTCTCAATGGTGGGTATcaaggagtgaaaccttgctaCTCCAATAATTGAGAAAAGTAACTTATAAACTTTATTCCTAATACAAATGATAACATACAGTAGTACTTCTATACTTAGTAATACTTCTCAATGTAAAGTCTTATCTCACGTAGTTAAGTTTACGTTTTATAACTCAAGATTTGACTTGGGATTGATACGAAAGAGGTGCTGGACTAAATTTTCTCTTTTACATTCAGCCAAGCCACTAGACACTGCACCAATAACTTTCCAAGGTATGGttcgatccacagactaaaatgctTGAACTACACggtattgcaaaaaaaaaaaaacagcaccacatgaaggcaCTGTTCTGTAGTTTTCGATAATATCGCTACATTCTTTGGTTTGCATCACAGACTAAAATGcaccagcaccacatgaaattacttttcattagctttccaaagagtggttacactgcatggtttgatccacagactaaaaagttagaaccacactgtatcacaaaacaaacagcaccacatgaaagtacttttcagcagctttccaaaggatggtcacactgcatggtttgatccacagactaaaaagtcagaatcacactgtatcacaaaacaaacagcaccacatgaaggtactgttcagtagctttccaaagaatggtcacactgcatggtttgatccacagactaaaaagttagaaccacactgtatcacaaaacaaacagcaccacatgaaagtactgttc

Protein

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08513 all species →	LisH	LisH	Domain	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006594 all species →	Conserved_site	LIS1 homology motif	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR045183 all species →	Family	F-box-like/WD repeat-containing protein Ebi-like	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22846 all species →	WD40 REPEAT PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000118 all species →	Cellular Component	histone deacetylase complex	Interproscan
GO:0003714 all species →	Molecular Function	transcription corepressor activity	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04508	TBL1; transducin (beta)-like 1	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.