Gene detail

Detailed information of ENSJQFP00000022359.1 in Rhodactis osculifera

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Rhodactis osculifera · all data for this species · gene families

Sequence

CDS

ENSJQFT00000023255

ATGCGACTCAAACCCCGCCAAATCGAAAGCTGGATGTTAGCGTTGGGTCTATTGGATCAGCGGCAAGGAACCACCGAATCCGAGAACTCTTTGCGGGACATTTTGAAAGATGGTTCGATCTTGTGCCGTTTAGTGAATCGTCTTAAGCCAGGTACCATAAATCAGGTGAGTGAACCGCTTCCAGTTGGAGGCAGTGAGCGCTTGGATAACATAGCTTCGTTCTTGAAAGCGTGTCAGGATCTGCGACTAAAAGAGGACGAGGTTAGCGAGGCAACATTAATTTTCCAACATGACGAGATGACAGATTATGGAGGAGGTATTCACCTTGTTAAAGCAACTTTTCCATTCAGTGGTAGAGATGATGATgaggtatttaaaaaaaacaaaattttaattGTTGTAGATGGAGGTTGGTGGGAAGGAACTTTAAATGGCAAGGTTGGATGGTTTCCCAGCAATTACGTGAAAGAAATATCAGCAAGTCCAGAACCAACTACACCTGTTACACCACAGCCATCTTCTTTATCATCATGTAAGAGGGAAAGTGCACGGCTATACCATAATTTGGTTGTTCAAAATATTTTGGACACAGAAAGAGCTCATGTCAGCGAGCTGCAAGTAAGAAATCATATTTTACTTTTAGGTCCTGTTGTTGTCAAGATTTCCAACACAGATATGCGAGTACTTGCTGGTAACTTTGAAGAAATTGTCCAGTTTCAGCAGATGTTTTTCCACATTATGGATGAATGTACCCAGTTAGTGTGgaattttctttgtgtttttcccTGTCTTATGAAGGAGCTGTACATGGCGTATTGTGCAAACCATCCAAGAGCTGTTGAAGTTTTAACAAAATATAGTGATGAATTATCAGCATTTATTGAAAGTAAAGGTGCTCCTTCTCCAGGAATACTTACACTTACAATGAGCCTAAGCAAGCCCTTTAGGCATCTGGACAAGTTTCCAAATCACATGAAAGAACTAGAAAGACATCTTGAGGAAGGACATGTAGATGAATTAGACACAAAAAAGGCTATTGCTGTGTTCCAGAATCTTGCTACAAGCTGCCATGAAAcacgaaaaaggaaagaaacagagcTTGAAATGCTGACTGGAACAATTGAGGGATGGGGAGAAGAGGTAATATGTGAACTAAACGTATTTTTTAATCTTCCACAGTACACATTGGGACTTGGCATATGTTTCCCTTTACAGGAGGTCAGAGAACGGTCCTTTCTTCTCTTCCCTAGTTGTCTTATTATACTTTCAGTCAATGCAAATGCTTGTGGATACTGCTTTGAGAAAAAGTATGATATTTCAGAATTAACAGTGCACTCGCTTGAGGATTCAGAAGGCATTTTAAATGCTTTTGAAATAAGAGTAAATGAGGATGTGATGAAACTATCCACCAACCATGCTCATGAGAAAACAGCTTGGATTGAAGCACTCCAACAGTCTAGTCCAAGAATACGGAAACAATCGCGGCAATCTGACATTATAACGTCCCCTTCACCTTGGGTTGAAAGGCAACGATTATCCTTGTCTGAAAGGACATTCTCAAAGTCCAGCCCTCCTAGAAGCGATTCCACTGGTTCCCCACCAAGCTCAAACACACCAAAGAGTTCTCTAAGTACATCTGGTtCATCAAGTGAAGGATTAAAGTTTCGCTCGATGTCCGCTTCGCATTCAGTCACTACAGACCTGACTGTCATGAGTTCACTGCCTCTAAGTCCTCACAGAAAGGGACACTGGGATTTCACGCGACTCAGACCAACTCCCCCCTTACGGCCTGCATATGCATTAATTGCCAAAGAGGACACCTCGACAGCACATCGTTCAATGCGGGGTATACTCCATccatcaagaaagaaacaaggTAAACTGTTATGTTGTGCACTTgagcattGTAGTCGAGTGTTGGAAGAGGACATGCTCATTCTTCGAGTTGTTGAGGCTTACTGCACAAGTGCCAGAGCAAGACATACCATAAACAGTAGTCCCATTCTTCCTGAGTTTCCAGCTCAGCAAGCTTCATCTTTCAGTCTGAAAAGTGATGTATGGAAGAGAAAGTCCAAGAAGAAGTTTAATAGGTCCCTTAAAGAGAAATGTTCTTCTTTCCCTCAGGAAACAGAGTCACTTCGACAAAGTTTACTAGAAGAACAACATGCCAGAAGAAAGATGGAAAAGTTTATCCGTTGTTCGCTGAAGGGTGTTATTCCCGATGTCAAATGGGAAGCTATTAATGACAGCTag

Transcript

ENSJQFT00000023255

Protein

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07653 all species →	SH3_2	Variant SH3 domain	Domain	Interproscan
PF00621 all species →	RhoGEF	RhoGEF domain	Domain	Interproscan
PF16614 all species →	RhoGEF67_u2	Unstructured region two on RhoGEF 6 and 7	Disordered	Interproscan
PF00307 all species →	CH	Calponin homology (CH) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR000219 all species →	Domain	Dbl homology (DH) domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR036872 all species →	Homologous_superfamily	CH domain superfamily	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR001715 all species →	Domain	Calponin homology domain	Interproscan
IPR035899 all species →	Homologous_superfamily	Dbl homology (DH) domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46026 all species →	RHO-TYPE GUANINE NUCLEOTIDE EXCHANGE FACTOR, ISOFORM F	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSJQFP00000022359.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.