Gene detail

Detailed information of ENSJQFP00000023930.1 in Rhodactis osculifera

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species abbreviation ROSCU · all data for this species · gene families

Sequence

CDS

Transcript

ENSJQFT00000024877

catttaatttattcacttccaatcacacactaccgtgtttccaccaatagcatagctccaaatttccctatataaactgcacgtaacccacaatcctctcattcgctccgacgaagggctaacgctcgaaacgtcagcacctcctttttaccttacggtgCTTTGCGAAATCTACACACAAGTGGTTCTACTTTGAGCAGGTTGCTGTTCACCTTTCTCAATGGCGCGATTTGTTCGTTTCCTTGCTTTACATATTCTCTGTGTGGCTTTTATTCCATGGCCAGATACTTCTGCACAAATTGATTGGTTGTCTACAGGCAAATCCACAAATGCAAGGTCAACAACTATGatgacttcaacttcaactgcCTCCAGTATGACCTTCGTACCATCCCACTTCTTGACACCATCAATTATGACAACAATCTCTTCCATCAAGCCATCTAATTCATCTTCTATTAAGCCATCTAACACATCTTCCATCAAACCATTCAATACATCTTCCATAAAACCATCCAATACATCTTCCATCAAGCCATCCAATACATCTTCCATCAAACCATCCAATACATCTTCCATAAAACCCTCCAATACGTCTTCCATAAAACCATCCAATACATCTTCCATCAAGCCATCCAATACATCTTCCATCAAGCCATCCAATACATCTTCCATCAAGCCATCCAATACATCTTCAACAGTTACAATGACATCAATCCACAACATGACAGTCACACCACATAGTACTACCACGCCATCACGCACGACAGTTTTGCCAATTCATAACACAACAGTTATGCCTTTGCATAGCACGAGGATCAAGCCATCTTCAGCGCACAGTGTGATGCCAACATCTTCTGTTGCTCCTAAGCCTCCAGCTCACCAAGGCAACTTCATTGTGAAGCAAAACGGTTCAGTGTGCCTAATTGCAGATATGGAAGCACAATTTACCATCAGctacaaacacaaaaaaaaattggagAATGTAACGGTTACTCTTCCAACGAATGCAACTGCCAGTGGAATGTGCAGGTCAAAGCTATCCTCCATTGTCTTGATGTGGCCGCCAGAAAGGAATCTGTACCAGTTTACTTTGAACTTTTCCCAGTCGTCAGGCATTGAACAAGCCAAGAGTGGTGCTTGGGTTATGGATCATTTCACGCTTGTTATCTTCACCACAAATAACACCCAGTTTCCCGGTGCTGAAGGGCCAAACATTACTTTCACCTCTAGTAAGTCACTACTGAATAGCACAGGTAAAGCATACAAGTGTATTCATGGTTCTCTTCAGTACAACCTCAAAAATGGCAAAACCCAGTCTGCCAAGATTACAATCAAGAACTACGAATTCCAGCCTTTTGATGTGAAACATGGAACATTCAGTGACGACGTTCAACATTGCCCAGCAGATAATCCAAGAACGTCTCCGCCAACATCAACCGTCAGTCCCACATCGACGAAAAACAACTCAAACAAAACAGTTGCTATTGCTGTGGGTTGCTCTTTGGCTGGCCTTGTCGTCATTGTTCTCGTTGGTTATCTGATTGGCCGACGTCGCAGTCGTAGTCAGGCAGGATATCGTAAGCTGTAATGATGAACGGGCCTCTTGACAAAACTGTGCATTTCTGGGCGCAAATGCATTTCAGCTCAACACAGTGGACATCTATGGTCAGACTGAAATGTCATCGGGTTACAAAACCTAGTTTTTGTAGAGTTGTTTGGGTGATTCAGTTTAGAGTGAACAACACAAAGAAATGGCCTTGTATCCTTTAACTAATTAAGATTTAATGTAAGATAACTTTGTTTTGGGACAAGAATTTAAAATCCGTTATATCCAGTGGTAATCAGTGTATACAACATAACATAGCATTTTTGTCAGTTACGAGTATAACTTTGTGAGACAAATGGCTTTCATTTGTGCCAAAGCATGTTTCTTTAATGATCCGCAGTTTTAGCTGTCAATTTGGTATAGTCAGAAGGTTACAAATGATACCTTTGcatcgtgctgtttgtttgggtATTTCATCCGATGAAATTTggttcctttttttaaaaaaaaaaagaacagataGTGGAAAATAACATTTTAAGTAAAAGAGCTGGGGCAGCTGTTAAGTATAAACACATTATGAATAGCGTAGTATACTCAAGTATATGAAACTAATTTCCGTTTATTATATCAATAAAGCTCTCCTTTGTTATTCGATTTTGTTTGGTAAATGGAACGCAAGTGTATTTCTGCAGTGTCTAGGATTTCAACTCCTCCTTGACACCATTCCTTGGTAAATTGCCCTCCCCCACCTGGCTACCCTCTGCCCCCGTTAGGAAATGTTTTTACCTTTCTATTACACTTCAAGATTTCAATCTCCCTGGACATGACTGGAAGAGGAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01299 all species →	Lamp	Lysosome-associated membrane glycoprotein (Lamp)	Family	Interproscan
PF21222 all species →	Lamp2_2nd	Lysosome-associated membrane glycoprotein 2, transmembrane segment	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048528 all species →	Domain	Lysosome-associated membrane glycoprotein 2-like, luminal domains	Interproscan
IPR002000 all species →	Family	Lysosome-associated membrane glycoprotein	Interproscan
IPR048524 all species →	Domain	Lysosome-associated membrane glycoprotein 2-like, transmembrane domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11506 all species →	LYSOSOME-ASSOCIATED MEMBRANE GLYCOPROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005765 all species →	Cellular Component	lysosomal membrane	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0031902 all species →	Cellular Component	late endosome membrane	Interproscan
GO:0072594 all species →	Biological Process	establishment of protein localization to organelle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSJQFP00000023930.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.