Gene detail

Detailed information of ENSJQFP00000024017.1 in Rhodactis osculifera

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Rhodactis osculifera · all data for this species · gene families

Sequence

CDS

Transcript

ENSJQFT00000024964

CGCGCCGGATTTCGGGTTCGCAAACCAAAGCGGGCATATTTCTGTTGTATTTTCAGTTATAAGCATTCGTtcaagttgtttgttttaactcTTCTTCATCATGGCAATGCAAGATGTTATTAATAAGGTTAAGGGCACTGCACTCGGAGTTGCAGAATACTTGACACCCGTGTTGAAGGAATCAAAGTTTCAAGAAACAGGAGTCATCACACCCGAGGAGTTTGTAGCAGCTGGGGACCATTTAGTCCATCACTGTCCAACATGGAAATGGGACTCTGGCCCAGATGAAACAAAAGTAAAGACTTACCTTCCAAATGACAAACAGTTTTTGTATACTAAGAATGTTCCTTGTTACAAGCGTTGTAAGGAGATGGAACACCAAGAAGAGAATGAAGCCATTGTTGAACCAGATGAGGATGGTGGTTGGGTGGACACCCACCATAATGTTCACCCGAGTGGAGAGCAAGCAGTCAGTGGTGCTCAGGAATCATTCACTGAGATGACACTTGAATCTGACAAGAGCTCAAAGGATGTAATGCCAGCAgctattgatgatgatgatgatgaagatgatgaagagGCAGTCGACATGGAAgCCTTTGCAGAGAGTGGTATGCTAGAAAGTGATGAGGCAACCTTGTCTATTCAGCCAGCTTCAAAGACTGCTACAGGAGAGAATGCAGTGGATGTTACTGCTACTGGTGGAATACTACAAACAAGGACTTATGACATGTATATCACATATGATAAATATTACCAGACACCACGGTTATGGCTGTTTGGCTACAATGAGAACCGGGATCCACTAACAGTAGAGGAAATGTACGAAGACATGAGTCAGGATCATGCAAAGAAAACAGTAACTGTTGAACCACACCCACATCTTCCCATGACTATGGCTTCTGTCCATCCTTGCAGGCATGCTGATGTAATGAAGAAAATTATTCaaacagtagcagatggtgggGGTGAGCTGGGAGTGCACATGTATTTACTGATCTTTCTCAAGTTCGTACAGGCAGTGATCCCCACAATAGAATATGACTACACAAGACACTTTTCAATGTAAAACAGCATTTGGatgaaatatattttattttgtgtttgtACTGAAAAGCCTTTGATCATGAGGGGTGGTCGACACTGAAGGACAATGGAAAGAGATAGCATCTGTTGAGATTAAGTTACTTTTTATTTCCAGGAGTACAAGGGTGTCTTGAGTTACCAACAGTTTAACTTTGAAGGTAGTTTCAAATATAAAAGAACTTGGTCCACCGTAGCTCTTGTaaggtttctcaaggaatgaagACAACAAAATGTTTCTTGCTGTAAAAGCAATACAGCTGCTTCAATTCCTCCACAGAGGTCCAGTGAATTCACAATCTAGCACCATGTGTCCAATTTCAATACATTTTTGATCAGCTTTAAGACATCTATGCAAAAtcttaaatgaaaagaaatagcATCTAGTCACTTTCATTGAAAGTAACATACCAAAACACTGGAAATATTTCTTCTTGCCTTTGGCTAGGGATGGCAAAGAATGAAGAATTTGAGGTAGTTAACAAAATAATGCAAAGAAACCATTTGAATAAGTTACATGATGGTATTGATATTCTAATTTTTATGAGTTACAAATGTATTTAAATATAAGAAAGTATACAGGAGAATGTTGGATTCCCATACACCAGGAACTGTATCATTGTTCAGAATAAAGGTGGTTTGATCCTTGAAATCTCTCAAGTACAAAAATATAGTTGGTACTTTTATGTACTACGTAATGAATGCACCTGTGTAGGATTTCTGCTTTCCTCAATGATCGAGACCTGTAACCTGACTTTtataatgaaaattatttttttagacTGGTACCTCTTCACTGTCATGTGCACTGGTGGCTTCTTGTAAACATCATTAATGAGATATTAAGAGGACAAATATGACAACCACTTGTATTACATATAATCGTGTAATGAGAGTTTTATGGTGGTATATTCTTTCACATAATATACCTCTATAGTGTGATGTAATTACTTACTAGGAAGTTTGAAAGACTGTCAAATGTCAC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03987 all species →	Autophagy_act_C	Autophagocytosis associated protein, active-site domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR046962 all species →	Family	Autophagy-related protein 3	Interproscan
IPR007135 all species →	Family	Ubiquitin-like-conjugating enzyme Atg3/Atg10	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12866 all species →	UBIQUITIN-LIKE-CONJUGATING ENZYME ATG3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000045 all species →	Biological Process	autophagosome assembly	Interproscan
GO:0000407 all species →	Cellular Component	phagophore assembly site	Interproscan
GO:0000422 all species →	Biological Process	autophagy of mitochondrion	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0019776 all species →	Molecular Function	Atg8-family ligase activity	Interproscan
GO:0044804 all species →	Biological Process	nucleophagy	Interproscan
GO:0019787 all species →	Molecular Function	ubiquitin-like protein transferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08343	ATG3; ubiquitin-like-conjugating enzyme ATG3	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.