Gene detail

Detailed information of ENSJQFP00000027230.1 in Rhodactis osculifera

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Rhodactis osculifera · all data for this species · gene families

Sequence

CDS

Transcript

ENSJQFT00000028261

GCGGCCTTGGAGTAGTTTGCCCTGCCAAGTAATCGTGTCAAGTTTAACCTTTGTAAACTTAATGTTTTATGGCAGAAATGGAGCCTGAAATAACCAAGCGTGCTTTTCAAGATGGAGCAATTCTGATTGCTCTCGATGTCCCTGAAGGAACCGAATTTGGCATTGATTACAAGTCTTGGAACGTCGGTCCTCTGTTTAAGGGAATTAAAATGATTCCACCAGGACTACATTTCGTCTCCTACAGTTCAGTGAATAATAGAACAGGACAAAGTGCCCCTAGAACTGgcatgttttgttttctcaagTGGCAAGATGTTTTGGTTATGAAATGGGACCCTGGTGCTGAGGATTTCGTTATGGCTGAGGTGGAcgaagaagagaaagaaagataCAGAACAGGTTTGAAAGACATGGATCGTTTTCTTGGTCCTTATCCCAGCGAGAACTTCAAGAAGTGGATCTCCTTAACAAGCCATGTAACAGAGGATCTTTTACAAAGACTACAACCACTATGCAAGAAATTATCATCTTCAACTGAGGTAGTGCAAGATGACTTGCATTCAACCAAAGCAACTTCTCCAGCAGAAAGCCAATCACCCTTGCttcaaaagaatgaaaacacaGTAATAAGATTCACAGAAATTCCCAAACAGAAATATCCAGTTGGAGCCAGTCCAGATGAAGTCAGCAAGTGCTGTATGGATTCCAGTTATGCTTTTAATTCTATGATAAATCAAATGAAAGATATAAATGAGATTCTTGGAGAACTCCAGTTTGCTTTTGTTTGCTTTCTAGTTGGCCAAGTGTATGATGCCTTTGAACACTGGAAAAACCTCCTCAATCTGCTTTGTACTTGTGATGATGTTCTGGCCACACACAGCAGTGTATTTGATGGTCTTATAGGAGTTCTGCACTTCCAAGTTTTGGAAATACCAAAGGATTTCTTTGTGGACATAGTGTCTGCGAACAACTTCTTAACCACCACCCTACAGGTATTTTTTTCGAACCTGGAGAGTTCAACGACAATGGAGAAAAAGCTTAGAGACAAAGCACGAAGATTCCGACGACACCTGACAAGACGCTTCAACTGGGACTTTGAAAGCGAACCAGACGAGTTTGCACCCGTTGTTGTAGAAACGTAAGGTTGCCGGTTTCGGCCAACAGGATGACCCAGGCATGGGTTGTACAATGGAATCATTAACGGAATGGGATAATGGTTTTCTATTTGATTCGATGTTTGTTGGTTTATGACACTCGAAAAGTCAAGCTTTTGCAGCAGTAACACACTGTAGCAAGTAGTGATACAAGTGCCCGTGATCTTCGTGACGAGGGTTACTTGTCACCAAAGTCAATTTCTGTAGTAACGTGTTGACGTACGGTCTTTACAGCACATATCCTCTCAAGTGTCAAAAAAAAGGCGACTTGAACACGGCGTGAGTATTACACACATTGTAGGTTTCCGACTGATTACCGTTACCAGTTtctttaacgtggaattcacccGTCGCGTACTGAGTTTTTTGTTATTTGTGTATTTGAGTGGGGTATAAACTCCGCACTGATGAACTCCAAATCGTAGTTGCCAAACCAACCGAAACATGCGGGCcacttcattcattcatcagcAAGATATCGTTAAGGTAAATATTCAGTCTTGAAATCATTTTACTGCTtattgataattcacatttattgtttcaccttcccaccgatgcagcacacagttccttttaaaACTAATCCCCAGAAACCAGTGGGCGTTTCTTTCCaagccaatcaaatttgagCTAGACGTTCGTTTTGATGTTCGGGTTCTGTTTGCACGCTTTCGATTCACGGTAATATACCTAAAGAGTTCAGTACATAACGCTTGATTGTCAGTTTTCACTTTTAAGCGGGCTGTGGACAATTTCTCCAATTTTTGCGCCCAAATCCTGTTAAGGCCTCCCAATATCAACCTAAAACAGTAAATGTATTTACCCGGTTGTAAACAGAAGACCAGGTTGCGGAACGTTGCCAAGATTCTTCCTCTGCTCCATTGATAAAACTTCTCCTCTAAAAAACGTCCATCAGATAATTTCTGACGCAAAAAGTCCCAAGCCGCGAATTTCAAACGCGGTCTTCGCACCTGCCCGTCACTG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20981 all species →	AAR2_1st	AAR2 N-terminal domain	Domain	Interproscan
PF05282 all species →	AAR2	AAR2 C-terminal repeat region	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007946 all species →	Family	A1 cistron-splicing factor, AAR2	Interproscan
IPR038514 all species →	Homologous_superfamily	AAR2, C-terminal domain superfamily	Interproscan
IPR038516 all species →	Homologous_superfamily	AAR2, N-terminal domain superfamily	Interproscan
IPR033647 all species →	Domain	AAR2, N-terminal	Interproscan
IPR033648 all species →	Domain	AAR2, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12689 all species →	A1 CISTRON SPLICING FACTOR AAR2-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000244 all species →	Biological Process	spliceosomal tri-snRNP complex assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13205	AAR2, C20orf4; A1 cistron-splicing factor AAR2	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.